Locus 4344

Sequence ID 3R_DroMel_CAF1
Location 11,464,101 – 11,464,221
Length 120
Max. P 0.904018
window7104

overview

Window 4

Location 11,464,101 – 11,464,221
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.56
Mean single sequence MFE -30.91
Consensus MFE -22.53
Energy contribution -23.04
Covariance contribution 0.50
Combinations/Pair 1.13
Mean z-score -2.21
Structure conservation index 0.73
SVM decision value 1.03
SVM RNA-class probability 0.904018
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11464101 120 + 27905053
UAAUAGCAAAACACUUUUCACAAUCAGUGGGCCAUAAAAAGGAAGUUUUCCAACGGAAUGCAUUACGCUAAUUAAUUCUUGAUAUAUGGCUAGGGAGCUGUGGCCAAAACGAGGCCACAA
....(((....((((..........))))(((((((...(((((...((((...)))).((.....)).......)))))....))))))).....)))((((((.......)))))).. ( -31.20)
>DroSec_CAF1 197909 120 + 1
CAAAAGCAAAACACUUUUCACGAUCAGUGGGCCAUAAAAAAGAAGUUUUCCAAGGGAAUGCAUUACGCUAAUUAAUUCCUGAUAUAUGGCUGAGGAGCUGUGGCCAAAACAAGGCCACAA
....(((...........(((.....)))(((((((.....((.....))...((((((...............))))))....))))))).....)))((((((.......)))))).. ( -29.96)
>DroSim_CAF1 193057 120 + 1
CAAAAGCAAAACACUUUUCACGAUCAGUAGGCCAUAAAAAAGAAGUUUUCCAAGGGAAUGCAUUACGCUUAUUAAUUCCUGAUAUAUGGCUGAGGAGCUGUGGCCAAAACGAGGCCACAA
.............((((((((.....)).(((((((........((.((((...)))).))........(((((.....)))))))))))))))))).(((((((.......))))))). ( -29.90)
>DroYak_CAF1 190144 116 + 1
-AAUACUCGAGCACUUUUCACGAUCUGUUUUCCCUUUU---GAUUGUGUCUAAGGGAAUGCAUUACGCUAAUUAAUUCUUGAUAUAUGGCCGAGAAGCUGUGGCCAAAACGAGGCCACAA
-....((((.((.....(((.((......(((((((..---(((...))).))))))).((.....))........)).)))......))))))....(((((((.......))))))). ( -32.60)
>consensus
CAAAAGCAAAACACUUUUCACGAUCAGUGGGCCAUAAAAAAGAAGUUUUCCAAGGGAAUGCAUUACGCUAAUUAAUUCCUGAUAUAUGGCUGAGGAGCUGUGGCCAAAACGAGGCCACAA
.............((((((((.....)).(((((((.....(((...)))...((((((...............))))))....))))))))))))).(((((((.......))))))). (-22.53 = -23.04 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:51 2006