Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,462,655 – 11,462,785 |
Length | 130 |
Max. P | 0.883903 |
Location | 11,462,655 – 11,462,745 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 77.06 |
Mean single sequence MFE | -17.37 |
Consensus MFE | -14.13 |
Energy contribution | -14.47 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.42 |
Structure conservation index | 0.81 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11462655 90 - 27905053 UAAAACUCAGUUGAUUCGGAUUUCUCAGAAAUCCUUCUGAAGAAAUCUGAGUGCUUUU--------CAA-------UUUAU----AUUCUGUUUUGCCAAAUACGUAGA ((((((..((((((((((((((((((((((....))))).)))))))))))......)--------)))-------))...----.....))))))............. ( -19.70) >DroSec_CAF1 196455 109 - 1 UAAAACACAGUUGAUUCGGAUUUCUCAGAAAUCCUUCUGAAGAAAUCAGAGUGCUCUUUAACCCUUCAAUCUACAAUUCAUCUCUCUUCUGUUAUUCCAAAUACGUUCG ......((((..((....((((((((((((....))))).)))))))((((....)))).........................))..))))................. ( -16.60) >DroSim_CAF1 191609 109 - 1 AAAAACUCAGUUUAUUCGAAUUUCUCAGAAAUUCUUCUGAAGAAAUCAGAGUGCUCUUUAACCCUUCAAUUUACAAUUUAUCGCAAUUCUGUAAUGCAAAAUAUGUUCG ........((..(((((..(((((((((((....))))).))))))..)))))..)).........................(((.........)))............ ( -15.80) >consensus UAAAACUCAGUUGAUUCGGAUUUCUCAGAAAUCCUUCUGAAGAAAUCAGAGUGCUCUUUAACCCUUCAAU_UACAAUUUAUC_C_AUUCUGUUAUGCCAAAUACGUUCG ........(((..((((.((((((((((((....))))).))))))).)))))))...................................................... (-14.13 = -14.47 + 0.33)
Location | 11,462,684 – 11,462,785 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 88.07 |
Mean single sequence MFE | -25.83 |
Consensus MFE | -16.82 |
Energy contribution | -16.27 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.10 |
Mean z-score | -3.08 |
Structure conservation index | 0.65 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11462684 101 - 27905053 AAAUUAUGGGACUUAUCGGGAAGCCAGAGUAUUUAUUAUUUAAAACUCAGUUGAUUCGGAUUUCUCAGAAAUCCUUCUGAAGAAAUCUGAGUGCUUUU--------CAA .................(..((((..((((.((((.....)))))))).....(((((((((((((((((....))))).))))))))))))))))..--------).. ( -31.70) >DroSec_CAF1 196495 109 - 1 AAAUUAUGGAACUUAUCAGGAAACCAGAGUAUAUAUUAUUUAAAACACAGUUGAUUCGGAUUUCUCAGAAAUCCUUCUGAAGAAAUCAGAGUGCUCUUUAACCCUUCAA .................(((.....(((((((.............((....))..((.((((((((((((....))))).))))))).))))))))).....))).... ( -21.10) >DroSim_CAF1 191649 109 - 1 AAAUUAUGGGACUUAUCAGGAAUCCAGAGUAUUUAUUAUUAAAAACUCAGUUUAUUCGAAUUUCUCAGAAAUUCUUCUGAAGAAAUCAGAGUGCUCUUUAACCCUUCAA .......(((................((((.((((....)))).))))((..(((((..(((((((((((....))))).))))))..)))))..))....)))..... ( -24.70) >consensus AAAUUAUGGGACUUAUCAGGAAACCAGAGUAUUUAUUAUUUAAAACUCAGUUGAUUCGGAUUUCUCAGAAAUCCUUCUGAAGAAAUCAGAGUGCUCUUUAACCCUUCAA ......(((..((....))....)))((((((.......((((.......)))).((.((((((((((((....))))).))))))).))))))))............. (-16.82 = -16.27 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:50 2006