Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,460,478 – 11,460,626 |
Length | 148 |
Max. P | 0.997401 |
Location | 11,460,478 – 11,460,586 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.71 |
Mean single sequence MFE | -33.68 |
Consensus MFE | -29.10 |
Energy contribution | -29.42 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.12 |
Mean z-score | -1.37 |
Structure conservation index | 0.86 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755123 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11460478 108 + 27905053 UGGCCAGGGGAGAGCUCCUUUGGCCUGAUGCAUUUACUGUUUAAUUUGGCAUGCAUUUUGUAGCCACCUUCGUCCUUUCCCAACAG------------UUUCUGCUGAUGUCGCCCGCCA .((((((((((....)))))))))).((((((...((((((.....((((.(((.....))))))).....(........))))))------------)...)))....)))........ ( -31.20) >DroSec_CAF1 193005 108 + 1 UGGCCAGGGGAGAGCUCCUUUGGCCUGAUGCAUUUACUGUUUAAUUUGGCAUGCAUUUUGUAGCCGCCUUCGUCCUUUCCCAGCAG------------UUUCUGCUGAUGUCGCCUGCCA .((((((((((....)))))))))).....................(((((.((..........((....))........((((((------------...)))))).....)).))))) ( -33.80) >DroSim_CAF1 188122 108 + 1 UGGCCAGGGGAGAGCUCCUUUGGCCCGAUGCAUUUACUGUUUAAUUUGGCAUGCAUUUUGUAGCCGCCUUCGUCCUUUCCCAGCAG------------UUUCUGCUGAUGUCGCCUGCCA .((((((((((....))))))))))((((..................(((.(((.....))))))...............((((((------------...))))))..))))....... ( -34.00) >DroEre_CAF1 182133 110 + 1 UGGCCGGAGGAGGGCUCCUUUGGCCUGAUGCAUUUACUGUUUAAUUUGGCAUGCAUUUUGUAGCCGCCUUCGUCCUUUCCCAGCAGC----------AUUUCCGCCGAUGUCGCCUGCCA .(((.(((.((((((......(((..((((((.....((((......)))))))))).....))))))))).))).......((.((----------(((......))))).))..))). ( -33.70) >DroYak_CAF1 186224 120 + 1 UGGCCAGGGGAGAGCUCCUUUGGCCUGAUGCAUUUACUGUUUAAUUUGGCAUGCAUUUUGUAUCCGCCUUCGUCCUUUCCCAGCAGUUUCUGUUCCUGUUUCUGCUGAUGUCGCCUGCCA .(((.(((((((((..(....(((..((((((.....((((......)))).......)))))).)))...)..))))))((((((...(.......)...))))))......)))))). ( -35.70) >consensus UGGCCAGGGGAGAGCUCCUUUGGCCUGAUGCAUUUACUGUUUAAUUUGGCAUGCAUUUUGUAGCCGCCUUCGUCCUUUCCCAGCAG____________UUUCUGCUGAUGUCGCCUGCCA .((((((((((....)))))))))).....................(((((.((.....((....)).............((((((...............)))))).....)).))))) (-29.10 = -29.42 + 0.32)
Location | 11,460,478 – 11,460,586 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.71 |
Mean single sequence MFE | -33.51 |
Consensus MFE | -31.68 |
Energy contribution | -31.28 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.19 |
Mean z-score | -1.88 |
Structure conservation index | 0.95 |
SVM decision value | 2.85 |
SVM RNA-class probability | 0.997401 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11460478 108 - 27905053 UGGCGGGCGACAUCAGCAGAAA------------CUGUUGGGAAAGGACGAAGGUGGCUACAAAAUGCAUGCCAAAUUAAACAGUAAAUGCAUCAGGCCAAAGGAGCUCUCCCCUGGCCA (((((.(((...(((((((...------------)))))))......((....))..........))).))))).....................(((((..(((....)))..))))). ( -30.80) >DroSec_CAF1 193005 108 - 1 UGGCAGGCGACAUCAGCAGAAA------------CUGCUGGGAAAGGACGAAGGCGGCUACAAAAUGCAUGCCAAAUUAAACAGUAAAUGCAUCAGGCCAAAGGAGCUCUCCCCUGGCCA ..(((.((....(((((((...------------)))))))...........((((((........)).))))..........))...)))....(((((..(((....)))..))))). ( -34.90) >DroSim_CAF1 188122 108 - 1 UGGCAGGCGACAUCAGCAGAAA------------CUGCUGGGAAAGGACGAAGGCGGCUACAAAAUGCAUGCCAAAUUAAACAGUAAAUGCAUCGGGCCAAAGGAGCUCUCCCCUGGCCA ..(((.((....(((((((...------------)))))))...........((((((........)).))))..........))...)))....(((((..(((....)))..))))). ( -34.70) >DroEre_CAF1 182133 110 - 1 UGGCAGGCGACAUCGGCGGAAAU----------GCUGCUGGGAAAGGACGAAGGCGGCUACAAAAUGCAUGCCAAAUUAAACAGUAAAUGCAUCAGGCCAAAGGAGCCCUCCUCCGGCCA ..(((.((....(((((((....----------.)))))))...........((((((........)).))))..........))...)))....((((..((((....))))..)))). ( -34.80) >DroYak_CAF1 186224 120 - 1 UGGCAGGCGACAUCAGCAGAAACAGGAACAGAAACUGCUGGGAAAGGACGAAGGCGGAUACAAAAUGCAUGCCAAAUUAAACAGUAAAUGCAUCAGGCCAAAGGAGCUCUCCCCUGGCCA (((((.(((...(((((((...............))))))).......((....)).........))).))))).....................(((((..(((....)))..))))). ( -32.36) >consensus UGGCAGGCGACAUCAGCAGAAA____________CUGCUGGGAAAGGACGAAGGCGGCUACAAAAUGCAUGCCAAAUUAAACAGUAAAUGCAUCAGGCCAAAGGAGCUCUCCCCUGGCCA ..(((.((....(((((((...............)))))))...........((((((........)).))))..........))...)))....(((((..(((....)))..))))). (-31.68 = -31.28 + -0.40)
Location | 11,460,518 – 11,460,626 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.48 |
Mean single sequence MFE | -35.04 |
Consensus MFE | -30.22 |
Energy contribution | -29.66 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.21 |
Mean z-score | -1.73 |
Structure conservation index | 0.86 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.946762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11460518 108 - 27905053 GGUUGGAUGACACUAUCGCCAUUUUGUUGUCAGCUGCUUCUGGCGGGCGACAUCAGCAGAAA------------CUGUUGGGAAAGGACGAAGGUGGCUACAAAAUGCAUGCCAAAUUAA ..((((....((((.(((((....(((((((.(((......))).)))))))(((((((...------------)))))))....)).))).))))((........))...))))..... ( -34.00) >DroSec_CAF1 193045 108 - 1 GGCAGGAUGACACUAUCGCCAUUUUGUUGUCAUCUGCUUCUGGCAGGCGACAUCAGCAGAAA------------CUGCUGGGAAAGGACGAAGGCGGCUACAAAAUGCAUGCCAAAUUAA ((((............((((..(((((((((..((((.....))))..))).(((((((...------------))))))).....))))))))))((........)).))))....... ( -37.20) >DroSim_CAF1 188162 108 - 1 GGCAGGAUGACACUAUCGCCAUUUUGUUGUCAGCUGCUUCUGGCAGGCGACAUCAGCAGAAA------------CUGCUGGGAAAGGACGAAGGCGGCUACAAAAUGCAUGCCAAAUUAA ((((.((((....))))((.(((((((....((((((((.((...(....).(((((((...------------))))))).......)).))))))))))))))))).))))....... ( -35.20) >DroEre_CAF1 182173 109 - 1 GG-UGGACGACACUAUCGCCAUUUUGUUGUCAGCUGCUUUUGGCAGGCGACAUCGGCGGAAAU----------GCUGCUGGGAAAGGACGAAGGCGGCUACAAAAUGCAUGCCAAAUUAA ((-((.....)))).(((((....(((((((.(((......))).)))))))(((((((....----------.)))))))....)).))).((((((........)).))))....... ( -36.30) >DroYak_CAF1 186264 120 - 1 GGUUGGAUGACACUAUCGCCAUUUUGUUGUCAGCUGCUCCUGGCAGGCGACAUCAGCAGAAACAGGAACAGAAACUGCUGGGAAAGGACGAAGGCGGAUACAAAAUGCAUGCCAAAUUAA (((((.((.......(((((..(((((((((..((((.....))))..))).(((((((...............))))))).....))))))))))).......)).)).)))....... ( -32.50) >consensus GGCUGGAUGACACUAUCGCCAUUUUGUUGUCAGCUGCUUCUGGCAGGCGACAUCAGCAGAAA____________CUGCUGGGAAAGGACGAAGGCGGCUACAAAAUGCAUGCCAAAUUAA (((.............((((..(((((((((..((((.....))))..))).(((((((...............))))))).....))))))))))((........))..)))....... (-30.22 = -29.66 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:48 2006