Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,459,818 – 11,459,919 |
Length | 101 |
Max. P | 0.580156 |
Location | 11,459,818 – 11,459,919 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 92.67 |
Mean single sequence MFE | -31.08 |
Consensus MFE | -25.52 |
Energy contribution | -26.92 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.12 |
Mean z-score | -1.35 |
Structure conservation index | 0.82 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580156 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11459818 101 + 27905053 UGUCCGAUUUUGUUGCUCUCGAGAAGCGGGAGCAAUCAACGCAUUGUCGACAGGUGGAAAACUUCAUGGCCAAUGAAUUGCAGUUGCCAAGUUUUAACCCU ((((.(((..(((((((((((.....))))))))......)))..)))))))(((..((((((...((((...((.....))...)))))))))).))).. ( -31.90) >DroSec_CAF1 192362 101 + 1 UGUCCGAUUUUGUUGCUCUCGAGGAGCGGGAGCAAUCAACGCAUUGUCGACAGGUGGAAAACUUCAUGGCCAAUGAAUUGCAGUUGCCAAGUUUUAACCUU ((((.(((..(((((((((((.....))))))))......)))..)))))))(((..((((((...((((...((.....))...)))))))))).))).. ( -32.30) >DroSim_CAF1 187467 101 + 1 UGCCCGAUUUUGUUGCUCUCGAGGAGCGGGAGCAAUCAACGCAUUGUCGACAGGUGGAAAACUUCAUGGCCAAUGAAUUGCAGUUGCCAAGUUUUAACCCU ....((((..(((((((((((.....))))))))......)))..))))...(((..((((((...((((...((.....))...)))))))))).))).. ( -30.10) >DroEre_CAF1 181517 96 + 1 UGUCCGACUUUAUUGCUCCCGAGGAGCGGGAGCCAUCAGCGCUUUGUCGACAGGUGGAAAACUUCAUGGCCAAUGAAUUGCAGUUGCCAUGUUUCA----- ((((.(((.....((((((...))))))((((((....).))))))))))))....((((....((((((...((.....))...)))))))))).----- ( -27.50) >DroYak_CAF1 185576 101 + 1 UGUCCGAUUUUGUUGCUCUCGAGGAGCGGGAGCAAUCAGCGCAUUGUCGACAGGUGGAAAACUUCAUGGCCAACGAAUUGCAGUUGCCAUGUUUUAGCCCU ((((.(((..(((((((((((.....))))))))......)))..)))))))(((.((((....((((((.(((........))))))))))))).))).. ( -33.60) >consensus UGUCCGAUUUUGUUGCUCUCGAGGAGCGGGAGCAAUCAACGCAUUGUCGACAGGUGGAAAACUUCAUGGCCAAUGAAUUGCAGUUGCCAAGUUUUAACCCU ((((.(((..(((((((((((.....))))))))......)))..)))))))(((..((((((...((((.(((........))))))))))))).))).. (-25.52 = -26.92 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:41 2006