Locus 4339

Sequence ID 3R_DroMel_CAF1
Location 11,459,418 – 11,459,518
Length 100
Max. P 0.570289
window7093

overview

Window 3

Location 11,459,418 – 11,459,518
Length 100
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.30
Mean single sequence MFE -32.83
Consensus MFE -23.59
Energy contribution -24.83
Covariance contribution 1.24
Combinations/Pair 1.04
Mean z-score -1.67
Structure conservation index 0.72
SVM decision value 0.07
SVM RNA-class probability 0.570289
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11459418 100 + 27905053
ACGCCUCAAUGAUUGCCA--ACAAUGGCGGCAGAAGUGGAAAUCCAUCCCGUAGUUUUGCCAAGAUGGCGUGUGGCAGGGCCAUAAAACAGCCUAAACUGCU------------------
(((((((.......((((--....))))(((((((((((....)))).......)))))))..)).)))))..((((((((.........)))....)))))------------------ ( -33.11)
>DroSec_CAF1 191964 100 + 1
ACGCCUCAAUGAUUGCCA--ACAAUGGCGGCAGAAGUGGAAAUCCAUCCCGUAGUUUUGCCAAGAUGGCGUGUGGCAGGGCCAUAAAACAGACUAAACUGCU------------------
(((((((.......((((--....))))(((((((((((....)))).......)))))))..)).)))))(((((...)))))....(((......)))..------------------ ( -31.71)
>DroSim_CAF1 187069 100 + 1
ACGCCUCAAUGAUUGCCA--ACAAUGGCGGCAGAAGUGGAAAUCCAUCCCGUAGUUUUGCCAAGAUGGCGUGUGGCAGGGCCAUAAAACAGCCUAAACUGCU------------------
(((((((.......((((--....))))(((((((((((....)))).......)))))))..)).)))))..((((((((.........)))....)))))------------------ ( -33.11)
>DroEre_CAF1 181121 101 + 1
ACGCCCCAAUGACUGCAAUGGCAAUGGCGGCAGAAGUAGAAAUCCAUCCCGUACUUCGGCCAAGAUGGCGUGUGGCGGGCCCAUAAAACGGCCUAAACUGC-------------------
.(((((((.((....)).)))....))))((((..((......((((((((.....)))....)))))......))(((((........)))))...))))------------------- ( -30.30)
>DroYak_CAF1 185149 118 + 1
ACGCCUCAAUGAUUGCCA--GCAAUGGCGUCAGAAGUGGAAAUCCAUCCCGUAGUUUCGCCAAGAUGGCGUGUGGCAGGGCCAUAAAAGAGCCUAAACUGCAUAAACUGCUUAAACUGCA
..((.....((((.((((--....))))))))(..((((....))))..)(((((((.(((.....)))(((..(..(((((......).))))...)..)))))))))).......)). ( -35.90)
>consensus
ACGCCUCAAUGAUUGCCA__ACAAUGGCGGCAGAAGUGGAAAUCCAUCCCGUAGUUUUGCCAAGAUGGCGUGUGGCAGGGCCAUAAAACAGCCUAAACUGCU__________________
(((((((.......((((......))))(((((((((((....)))).......)))))))..)).)))))(((((...))))).................................... (-23.59 = -24.83 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:40 2006