Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,457,692 – 11,457,810 |
Length | 118 |
Max. P | 0.500000 |
Location | 11,457,692 – 11,457,810 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.76 |
Mean single sequence MFE | -22.42 |
Consensus MFE | -18.18 |
Energy contribution | -18.10 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.11 |
Mean z-score | -1.32 |
Structure conservation index | 0.81 |
SVM decision value | -0.08 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11457692 118 + 27905053 UGGCUUGCAAAAUGCUUUUGGCCUCGGCUAAGUUCACUCUGCUC--AGCCCUCAAGUGCAAUCAAAUAAUUGUAAUCUCUUUCAAAUUGCAGUUAAGUUCUACUUCCACUUCUUAUUCCC .((((.(((.(.((..((((((....))))))..)).).)))..--))))...(((((........((((((((((.........))))))))))((.....))..)))))......... ( -23.60) >DroSec_CAF1 190226 110 + 1 UGGCUUGCAAAAUGCUUUUGGCCUCGGCUAAGUUCGCUCUGCUC--A--------GUGCAAUCAAAUAAUUGUAAUCUCUUUCAAAUUGCAGUUAAGUUCUACUUCCACUUCUUAUUCCC .((((.((.....))....))))..((..((((..(((.(((..--.--------..)))......((((((((((.........)))))))))))))...))))))............. ( -19.60) >DroSim_CAF1 185310 118 + 1 UGGCUUGCAAAAUGCUUUUGGCCUCGGCUAAGUUCGCUCUGCUC--AGCCCUCAAGUGCAAUCAAAUAAUUGUAAUCUCUUUCAAAUUGCAGUUAAGUUCUACUUCCACUUCUUAUUCCC .((((.(((....((.((((((....))))))...))..)))..--))))...(((((........((((((((((.........))))))))))((.....))..)))))......... ( -23.40) >DroEre_CAF1 179421 120 + 1 UGGCUUGCAAAAUGCUUUUGGCCUCGGCCAAGUUCGCUCUGCUCGCUGCCCUCAAGUGCAAUCAAAUAAUUGUAAUCUCUUUCAAAUUGCAGUUAAGUUCUGCUUCCACUUCUUACUUCC .(((..(((....((.((((((....))))))...))..)))..)))......(((((.((.((..((((((((((.........)))))))))).....)).)).)))))......... ( -24.70) >DroYak_CAF1 183342 118 + 1 UGACUUGCAAAAUGCUUUUGGCCUCGGCUAAGUUCGCACUGCUC--AGCCCUCAAGUGCAAUCAAAUAAUUGUAAUCUCUUUUAAAUUGCAGUUAAGUUCUACUUCCACUUCUACUUUCC (((.(((((....((.....))...((((.(((.......))).--))))......))))))))..((((((((((.........))))))))))......................... ( -20.80) >consensus UGGCUUGCAAAAUGCUUUUGGCCUCGGCUAAGUUCGCUCUGCUC__AGCCCUCAAGUGCAAUCAAAUAAUUGUAAUCUCUUUCAAAUUGCAGUUAAGUUCUACUUCCACUUCUUAUUCCC (((.(((((...((..((((((....))))))..))....((.....)).......))))))))..((((((((((.........))))))))))......................... (-18.18 = -18.10 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:36 2006