Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,457,306 – 11,457,399 |
Length | 93 |
Max. P | 0.681628 |
Location | 11,457,306 – 11,457,399 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 87.42 |
Mean single sequence MFE | -36.17 |
Consensus MFE | -29.31 |
Energy contribution | -29.38 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.58 |
Structure conservation index | 0.81 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681628 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11457306 93 - 27905053 GCGGUCG-GGGGAGCUCUUCAAAGAGUUUGUCAAGCGGCAAAAGUCUGCGGCUAAUUAUGCGAUAUGCGAUGCAGGAG-UGGGGAUUCCCCUCC----C-------- (((((((-((.(((((((....))))))).)).(((.(((......))).))).......)))).)))......((((-.(((....)))))))----.-------- ( -34.10) >DroSec_CAF1 189836 97 - 1 GCGGUCG-AGGGAGCUCUUCAAAGAGUUUGUCAAGCGGCAAAAGUCUGCGGCUAAUUAUGCGAUAUGCGAUGCAGGAG-UGGGGAUUCCCCUCCUUCCU-------- (((((((-...(((((((....)))))))....(((.(((......))).))).......)))).))).....(((((-.(((....))))))))....-------- ( -31.90) >DroSim_CAF1 184920 97 - 1 GCGGUCG-GGGGAGCUCUUCAAAGAGUUUGUCAAGCGGCAAAAGUCUGCGGCUAAUUAUGCGAUAUGCGAUGCAGGAG-UGGGGAUUCCCCUCCAUCCU-------- (((((((-((.(((((((....))))))).)).(((.(((......))).))).......)))).)))......((((-.(((....))))))).....-------- ( -35.00) >DroEre_CAF1 179035 100 - 1 GCGGUCGCGGGAAGCUCUUCAAAGAGUUUGUCAAGCGGCAAAAGUCUGCGGCUAAUUAUG-------CGAUGCAGGAGAUGGGGAUGCCCCUCCUUCCUGCUCCCGG .(((((((((.(((((((....))))))).)).(((.(((......))).)))......)-------))).(((((((..((((....))))..)))))))..))). ( -43.70) >consensus GCGGUCG_GGGGAGCUCUUCAAAGAGUUUGUCAAGCGGCAAAAGUCUGCGGCUAAUUAUGCGAUAUGCGAUGCAGGAG_UGGGGAUUCCCCUCCUUCCU________ (((.(((.((.(((((((....))))))).)).(((.(((......))).)))..............)))))).((((..(((....)))))))............. (-29.31 = -29.38 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:34 2006