Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,457,157 – 11,457,273 |
Length | 116 |
Max. P | 0.951156 |
Location | 11,457,157 – 11,457,273 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -29.38 |
Consensus MFE | -26.09 |
Energy contribution | -26.69 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.89 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951156 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11457157 116 - 27905053 UCAGACAGCAACUGCAAUUGCAUUCGCACAAAGGACGGAAAAGAACUGCCAAAAAGCCGAAUGACAUGUGAAAAUAUGCAAAUAUCAAAAGUGA----AUGGGUCUGGGACCGGUCUGGC ((((((.((....)).....(((((((.....((.(((.......)))))...........((.(((((....)))))))..........))))----)))((((...)))).)))))). ( -30.30) >DroSec_CAF1 189683 120 - 1 UCAGACAGCCACUGCAAUUGCAUUCGCACAAAGGACGGAAAAGAACUGCCAAAAAGCCGAAUGACAUGUGAAAAUAUGCAAAUAUCAAAAGUGAAUGAAUGGGUCUGGGACCGGUCUGGC ((((((..((...((.....(((((((.....((.(((.......)))))...........((.(((((....)))))))..........))))))).....))...))....)))))). ( -29.80) >DroSim_CAF1 184767 120 - 1 UCAGACAGCAACUGCAAUUGCAUUCGCACAAAGGACGGAAAAGAACUGCCAAAAAGCCGAAUGACAUGUGAAAAUAUGCAAAUAUCAAAAGUGAAUGAAUGGGUCUGGGACCGGUCUGGC ((((((.((....)).....(((((((.....((.(((.......)))))...........((.(((((....)))))))..........)))))))....((((...)))).)))))). ( -30.10) >DroEre_CAF1 178878 119 - 1 UCAGACAGCAACUGCACUUGCAUUCGCACAAAAGACGGAAAAGAAAUGCCAA-AAGCCGAAUGACAUGUGAAAAUAUGCAAAUAUCAAGAGUGAAUGAAUGGGUCUGGGACCGGUCUGGC ((((((.((....)).(...(((((((.........((...(....).))..-........((.(((((....)))))))..........)))))))...)((((...)))).)))))). ( -28.50) >DroYak_CAF1 182762 120 - 1 UCAGACAGCAACUGCAAUUGCAUUCGCACAAAAGACGGAAAAGAAAUGCCAAAAAGCCGAAUGACAUGUGAAAAUAUGCAAAUAUCAAAAGUGAAUGAAUGGGUCUGGGACCGGUCUGGC ((((((.((....)).....(((((((.........((...(....).))...........((.(((((....)))))))..........)))))))....((((...)))).)))))). ( -28.20) >consensus UCAGACAGCAACUGCAAUUGCAUUCGCACAAAGGACGGAAAAGAACUGCCAAAAAGCCGAAUGACAUGUGAAAAUAUGCAAAUAUCAAAAGUGAAUGAAUGGGUCUGGGACCGGUCUGGC ((((((.((....)).....(((((((........(((..................)))..((.(((((....)))))))..........)))))))....((((...)))).)))))). (-26.09 = -26.69 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:33 2006