Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,456,565 – 11,456,790 |
Length | 225 |
Max. P | 0.998980 |
Location | 11,456,565 – 11,456,685 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -26.46 |
Energy contribution | -26.22 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.32 |
Structure conservation index | 0.96 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11456565 120 + 27905053 UAUUAACAGCAACGUAAUCUGAAUGCGAAAUCAAGUCGCAGUGUACAGCCCACAAUAUCAGUUGACAACUGUCGACGGUCGUCUGGCAGGCAUUUAAACGCUUGUCAAAAUUAUAUAAAC .............(((((((((.(((((.......)))))(((.......)))....))))..(((.((((....)))).)))((((((((........))))))))..)))))...... ( -27.30) >DroSec_CAF1 189053 120 + 1 UAUUAACAGCAACGUAAUCUGAAUGCGAAAUCAAGUUGCAGUGCACAGCCCACAAUAUCAGUUGACAACUGUCGACGGUCGUCUGGCAGGCAUUUAAACGCUUGUCAAAAUUAUAUAAAC ........(((..((((..(((........)))..))))..)))................((((((....)))))).......((((((((........))))))))............. ( -27.90) >DroSim_CAF1 184137 120 + 1 UAUUAACAGCAACGUAAUCUGAAUGCGAAAUCAAGUUGCAGUGCACAGCCCACAAUAUCAGUUGACAACUGUCGACGGUCGUCUGGCAGGCAUUUAAACGCUUGUCAAAAUUAUAUAAAC ........(((..((((..(((........)))..))))..)))................((((((....)))))).......((((((((........))))))))............. ( -27.90) >DroEre_CAF1 178263 120 + 1 UAUUAGCAACAACGUAAUCUGAAUGCGAAAUCAAGUCGCAGUGCACAGCCCACAAUAUCAGUUGACAACUGUCGACGGUCGUCUGGCAGGCAUUUAAACGCUUGUCAAAAUUAUAUAAAC .............(((((((((.(((((.......)))))(((.......)))....))))..(((.((((....)))).)))((((((((........))))))))..)))))...... ( -27.00) >DroYak_CAF1 182135 120 + 1 UAUUAGCAACAACGUAAUCUGAAUGCGAAAUCAAGUCGCAGUGCACAGUCCACAAUAUCAGUUGACAACUGUCGACGGUCGUCUGGCAGGCAUUUAAACGCUUGUCAAAAUUAUAUAAAC .............(((((((((.(((((.......)))))(((.......)))....))))..(((.((((....)))).)))((((((((........))))))))..)))))...... ( -27.00) >consensus UAUUAACAGCAACGUAAUCUGAAUGCGAAAUCAAGUCGCAGUGCACAGCCCACAAUAUCAGUUGACAACUGUCGACGGUCGUCUGGCAGGCAUUUAAACGCUUGUCAAAAUUAUAUAAAC .............(((((((((.(((((.......)))))(((.......)))....))))..(((.((((....)))).)))((((((((........))))))))..)))))...... (-26.46 = -26.22 + -0.24)
Location | 11,456,645 – 11,456,765 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.00 |
Mean single sequence MFE | -38.82 |
Consensus MFE | -33.00 |
Energy contribution | -33.40 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.06 |
Mean z-score | -2.80 |
Structure conservation index | 0.85 |
SVM decision value | 3.31 |
SVM RNA-class probability | 0.998980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11456645 120 + 27905053 GUCUGGCAGGCAUUUAAACGCUUGUCAAAAUUAUAUAAACUGCUGUCAGAAGUGCCGGCGGGAACUAGGGAACUUUUUCCGCUACGGUUUCCUUUAAAGUGCAGCAAUACACUAAGCCAA ...((((((((........)))))))).............((((((..((((.(((((((((((..((....)).)))))))..))))...)))).....)))))).............. ( -35.50) >DroSec_CAF1 189133 120 + 1 GUCUGGCAGGCAUUUAAACGCUUGUCAAAAUUAUAUAAACUGCUGUCAGAAGUGCCGGCGGGAACUAGGGAACUUUUUCCGCCACAGCCUCCUUUAAAGUGCAGCAAUACACUAAGCAAA ...((((((((........)))))))).............((((........(((.((((((((..((....)).))))))))...((((.......)).)).)))........)))).. ( -35.19) >DroSim_CAF1 184217 120 + 1 GUCUGGCAGGCAUUUAAACGCUUGUCAAAAUUAUAUAAACUGCUGUCAGAAGUGCCGGCGGGAACUAGGGAACUUUUUCCGCCACGGCCUCCUUUAAAGUGCAGCAAUACACUAAGCAAA ...((((((((........)))))))).............((((...((.((.(((((((((((..((....)).))))))))..))))).))....((((.(....).)))).)))).. ( -37.40) >DroEre_CAF1 178343 119 + 1 GUCUGGCAGGCAUUUAAACGCUUGUCAAAAUUAUAUAAACUGCUGUCAGAAGUGC-GGCGGGAACUAGGCAACUUUUUCCGCCACUGUGCUCCUUAAAGUGCAGAAGUACACUGAGCCAA ...((((((((........))))))))..............((..((((..((((-((((((((..((....)).)))))))).(((..((......))..)))..)))).))))))... ( -43.10) >DroYak_CAF1 182215 120 + 1 GUCUGGCAGGCAUUUAAACGCUUGUCAAAAUUAUAUAAACUGCUGUCAGAAGUGCCGGCGGGAACUAGGGAACUUUUUCCGCCACGGUCUUCUUUAAAGUGCAGCAGUGCACUGAGCCAA ...((((((((........))))))))...........((((((((.(((((.(((((((((((..((....)).))))))))..)))))))).......))))))))((.....))... ( -42.90) >consensus GUCUGGCAGGCAUUUAAACGCUUGUCAAAAUUAUAUAAACUGCUGUCAGAAGUGCCGGCGGGAACUAGGGAACUUUUUCCGCCACGGUCUCCUUUAAAGUGCAGCAAUACACUAAGCCAA ...((((((((........)))))))).............((((((..((((.(((((((((((..((....)).))))))))..)))...)))).....)))))).............. (-33.00 = -33.40 + 0.40)
Location | 11,456,685 – 11,456,790 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.06 |
Mean single sequence MFE | -31.80 |
Consensus MFE | -22.54 |
Energy contribution | -22.54 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.16 |
Mean z-score | -1.67 |
Structure conservation index | 0.71 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.605051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11456685 105 + 27905053 UGCUGUCAGAAGUGCCGGCGGGAACUAGGGAACUUUUUCCGCUACGGUUUCCUUUAAAGUGCAGCAAUACACUAAGCCAAAAACUAACCAAAGAUGCU--GGCUACU------------- ((((((..((((.(((((((((((..((....)).)))))))..))))...)))).....))))))........(((((..(.((......)).)..)--))))...------------- ( -30.70) >DroSec_CAF1 189173 105 + 1 UGCUGUCAGAAGUGCCGGCGGGAACUAGGGAACUUUUUCCGCCACAGCCUCCUUUAAAGUGCAGCAAUACACUAAGCAAAAAACUAACUAAAGAUGCA--GGCUACU------------- .(((......)))...((((((((..((....)).))))))))..(((((.......((((.(....).))))..(((................))))--))))...------------- ( -26.89) >DroSim_CAF1 184257 105 + 1 UGCUGUCAGAAGUGCCGGCGGGAACUAGGGAACUUUUUCCGCCACGGCCUCCUUUAAAGUGCAGCAAUACACUAAGCAAAAAACCAACUAAAGAUGCA--GGCGACU------------- ....(((.........((((((((..((....)).))))))))...((((.......((((.(....).))))..(((................))))--)))))).------------- ( -28.19) >DroEre_CAF1 178383 106 + 1 UGCUGUCAGAAGUGC-GGCGGGAACUAGGCAACUUUUUCCGCCACUGUGCUCCUUAAAGUGCAGAAGUACACUGAGCCAAAAACGAGCCAAGGAUGUA--GGCUGAUGC----------- .((.(((((..((((-((((((((..((....)).)))))))).(((..((......))..)))..)))).(((..((.............))...))--).)))))))----------- ( -37.02) >DroYak_CAF1 182255 120 + 1 UGCUGUCAGAAGUGCCGGCGGGAACUAGGGAACUUUUUCCGCCACGGUCUUCUUUAAAGUGCAGCAGUGCACUGAGCCAAAAACUAACUAAAGAUGUAAAGACUAAAGCGUAACUACAGC .(((((.((...(((.((((((((..((....)).))))))))..(((((((((((.((((((....)))))).((.......))...)))))).....)))))...)))...))))))) ( -36.20) >consensus UGCUGUCAGAAGUGCCGGCGGGAACUAGGGAACUUUUUCCGCCACGGUCUCCUUUAAAGUGCAGCAAUACACUAAGCCAAAAACUAACUAAAGAUGCA__GGCUACU_____________ ((((((..((((.(((((((((((..((....)).))))))))..)))...)))).....)))))).............................((....))................. (-22.54 = -22.54 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:31 2006