Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,626,192 – 1,626,308 |
Length | 116 |
Max. P | 0.909855 |
Location | 1,626,192 – 1,626,308 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 80.54 |
Mean single sequence MFE | -30.70 |
Consensus MFE | -21.80 |
Energy contribution | -23.40 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.14 |
Mean z-score | -2.04 |
Structure conservation index | 0.71 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.909855 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1626192 116 - 27905053 ACC--UCCGAGCCCAACCUUCACCUCCACCUCCACCUGCUCCUGAGCCUGAACCUGAAAUCACUUAAUCAGUUUAUGCAGCACAAAUUUGCCCAGGCAAAGUGGGCUUGGCAUUGGUA- (((--.(((((((((....................((((...(((((.(((...((....)).....)))))))).))))......(((((....))))).)))))))))....))).- ( -32.10) >DroSec_CAF1 5528 116 - 1 ACC--UCCGAGCCCAACCUCCACCUCCACCUCCACCUGCUCGUGAGCCUGAACCUGAAAUCACUUAAUCAGUUUAUGCAGCACAAAUUUGCCCAGGCAAAGUGGGCUUGGCAUUGGUG- (((--.(((((((((.....................(((((((((((.(((...((....)).....)))))))))).))))....(((((....))))).)))))))))....))).- ( -35.60) >DroSim_CAF1 5538 104 - 1 ACC--UCCGAGCCCAACCUC------------CACCUGCUCGUGAGCCUGAACCUGAAAUCACUUAAUCAGUUUAUGCAGCACAAAUUUGCCCAGGCAAAGUGGGCUUGGCAUUGGUG- (((--.(((((((((.....------------....(((((((((((.(((...((....)).....)))))))))).))))....(((((....))))).)))))))))....))).- ( -35.60) >DroYak_CAF1 5368 100 - 1 AGGUGGCCAAGCCCAACCUC------------------CUCGUGAGCCUGAACCUGAAAUCACUUAAUCAGUUUAUGCAGCACAAAUUUGCCCAGGCAAAGUGGGCUUGGUAUAGGUA- .....((((((((((.....------------------...(((.((.(((((.(((..........)))))))).))..)))...(((((....))))).)))))))))).......- ( -33.20) >DroAna_CAF1 5862 109 - 1 UCC--UCCUGCCGGAACCUCAACAUCAACAUCAA------CCUGGACCUGAACCUGAAAUCACUUAAUCAGUUUAUGCAGCACAAAUUUACUCA-GCAAAGUGGGCUUGGCAUGG-UGC ..(--.((((((((..((.(..............------........(((((.(((..........))))))))(((................-)))..).))..)))))).))-.). ( -16.99) >consensus ACC__UCCGAGCCCAACCUC_AC_UC_AC_UCCACCUGCUCGUGAGCCUGAACCUGAAAUCACUUAAUCAGUUUAUGCAGCACAAAUUUGCCCAGGCAAAGUGGGCUUGGCAUUGGUG_ ......(((((((((......................((((((((((.(((...((....)).....)))))))))).))).....(((((....))))).)))))))))......... (-21.80 = -23.40 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:03 2006