Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,453,024 – 11,453,137 |
Length | 113 |
Max. P | 0.810931 |
Location | 11,453,024 – 11,453,137 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.83 |
Mean single sequence MFE | -33.22 |
Consensus MFE | -31.32 |
Energy contribution | -31.36 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.22 |
Structure conservation index | 0.94 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11453024 113 - 27905053 CGCAUGAUGCAAGCGCUCAACUUGCUGCUCACUGACUUCACCUAGCCACCGCAUUGAGCCGCUUCUGUCUGCCAACU-------GCUGGCUGCUGCCACUUUGCCAGCUGAUUAAUGUCU .(((.((((.((((((((((..(((.(((...((....))...)))....)))))))).))))).))))))).....-------((((((............)))))).(((....))). ( -32.70) >DroSec_CAF1 185549 113 - 1 CGCAUGAUGCAAGCGCUCAACUUGCUGCUCACUGACUUCACCUAGCCACCGCAUUGAGCCGCUUCUGUCUGCCAACU-------GCUGGCUGCUGCCACUUUGCCAGCUGAUUAAUGUCU .(((.((((.((((((((((..(((.(((...((....))...)))....)))))))).))))).))))))).....-------((((((............)))))).(((....))). ( -32.70) >DroSim_CAF1 180600 113 - 1 CGCAUGAUGCAAGCGCUCAACUUGCUGCUCACUGACUUCACCUAGCCACCGCAUUGAGCCGCUUCUGUCUGCCAACU-------GCUGGCUGCUGCCACUUUGCCAGCUGAUUAAUGUCU .(((.((((.((((((((((..(((.(((...((....))...)))....)))))))).))))).))))))).....-------((((((............)))))).(((....))). ( -32.70) >DroEre_CAF1 174929 120 - 1 CGCAUGAUGCAAGCGCUCAACUUGCUGCUCACUGACUUCGCCUAGCCACCGCAUUGAGCCGCUUCUGUCUGCCAACUGCCGACUGCUGGCUGCUGCCACUUGGCCAGCUGAUUAAUGUCU .(((.((((.((((((((((..(((.(((...((....))...)))....)))))))).))))).)))))))........(((.((((((((........))))))))........))). ( -33.80) >DroYak_CAF1 178550 120 - 1 CGCAUGAUGCAAGCGCUCAACUUGCUGCUCACUGACUUCACCUAGCCACCGCAUUGAGCCACUUCUGUCUGCCGACUGUUGGCUGCUGGCUGCUGCCACUUUGCCAGCUGAUUAAUGUCU .(((.((((.(((.((((((..(((.(((...((....))...)))....)))))))))..))).))))))).(((.((..(((((((((....))))....).))))..))....))). ( -34.20) >consensus CGCAUGAUGCAAGCGCUCAACUUGCUGCUCACUGACUUCACCUAGCCACCGCAUUGAGCCGCUUCUGUCUGCCAACU_______GCUGGCUGCUGCCACUUUGCCAGCUGAUUAAUGUCU .(((.((((.((((((((((..(((.(((...((....))...)))....)))))))).))))).)))))))............((((((............)))))).(((....))). (-31.32 = -31.36 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:20 2006