Locus 4327

Sequence ID 3R_DroMel_CAF1
Location 11,452,263 – 11,452,383
Length 120
Max. P 0.943910
window7072

overview

Window 2

Location 11,452,263 – 11,452,383
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.28
Mean single sequence MFE -30.85
Consensus MFE -27.19
Energy contribution -26.50
Covariance contribution -0.69
Combinations/Pair 1.19
Mean z-score -2.04
Structure conservation index 0.88
SVM decision value 1.34
SVM RNA-class probability 0.943910
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11452263 120 - 27905053
ACCCACAUAUGUGCAGUACUUCCUCAUCUAAUUGAGGUAACGACUUAAUAAGUGAACUCUGCGUUCGCUUGCUUCACCUCAAAUGAGCGGCAAGCGCAUUAUUCCAUUUCAAGUUCAGCU
..........(((((((....(((((......))))).....)))....((((((((.....))))))))(((((..(((....)))..).))))))))..................... ( -28.30)
>DroSec_CAF1 184802 120 - 1
ACCCACACAUGUGCAGUACUUCCUCAUCUAAUUGAGGUAACGACUUAAUAAGUGAACUCUGCGCUUAUUUCCUUCACCUUGAAUGAGCGGCAAGCGCAUUAUUGCAUUUCAAGUUCAGCU
............(((((....(((((......))))).....))).......((((((...(((((((((..........)))))))))((((........))))......)))))))). ( -27.50)
>DroSim_CAF1 179376 120 - 1
ACCCACACAUGUGCAGCACUUCCUCAUCUAAUUGAGGUAACGACUUAAUAAGUGAACUCUGCGUUUGCUUGCCUCACCUUGAAUGAGCGGCAAGCGCAUUAUUGCAUUUCAAGUUCAGCU
...(((....))).(((....(((((......)))))....(((((...(((((.....((((((((((.((.(((.......)))))))))))))))......))))).)))))..))) ( -32.20)
>DroYak_CAF1 177803 118 - 1
ACCCACA--UGUGCAGUACUUCCUCAUCUAAUUGAGGUAACGACUUAAUAAGUGAACACCGCGUUUAUUCCCUGCACCUGAAGUGCGGGGUAAGCGCAUUAUUACAUUUCAAGUUCAGCU
...(((.--(((..(((....(((((......))))).....)))..))).)))......(((((((..((((((((.....)))))))))))))))....................... ( -35.40)
>consensus
ACCCACACAUGUGCAGUACUUCCUCAUCUAAUUGAGGUAACGACUUAAUAAGUGAACUCUGCGUUUACUUCCUUCACCUUAAAUGAGCGGCAAGCGCAUUAUUGCAUUUCAAGUUCAGCU
...(((....))).(((....(((((......)))))....(((((...(((((.....(((((((((.(((.(((.......)))))))))))))))......))))).)))))..))) (-27.19 = -26.50 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:18 2006