Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,443,684 – 11,443,801 |
Length | 117 |
Max. P | 0.988983 |
Location | 11,443,684 – 11,443,801 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.65 |
Mean single sequence MFE | -29.13 |
Consensus MFE | -24.39 |
Energy contribution | -25.64 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.29 |
Structure conservation index | 0.84 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.988983 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11443684 117 - 27905053 CAUAUCAU-GACGGGCUCCGUUCGCCACUCAAUGUCAACUGCAAAACAAGCAAUGACAGCGGGGCACACACACGACCACGCCCCCAUCCCAGGGGACAC--ACACUCACGCCCCCAACAA .......(-((..(((.......)))..))).(((((..(((.......))).)))))(.(((((.......((....)).((((......))))....--........))))))..... ( -30.70) >DroSec_CAF1 183638 116 - 1 CAUAUCAUUGACGGGCUCCGUUCGCCACUCAAUGUCAACUGCAAAACAAGCAAUGACAGCGGGGCACACACACGACCACGCCCCCAACCCAGGGGACAC--ACACUCACGCC-CCAA-AA ......(((((..(((.......)))..)))))((((..(((.......))).))))...(((((.......((....)).((((......))))....--........)))-))..-.. ( -32.20) >DroSim_CAF1 178221 117 - 1 CAUAUCAUUGACGGGCUCCGUUCGCCACUCAAUGUCAACUGCAAAACAAGCAAUGACAACGGGGCACACACACGACCACGCCCCCAGCCCAGGGGACAC--ACACUCACGCCCCCAA-AA ............(((((...............(((((..(((.......))).)))))..(((((..............))))).))))).((((....--..........))))..-.. ( -31.68) >DroEre_CAF1 173070 98 - 1 CAUAUCAUUGACGGGCUCCGUUCGCCACUCAAUGUCAACUGCACAACAAGCAAUGACAGCGGGGCACACACACGGCCACGCC-CCAUCCC-----------------ACGCCCCCA---- ......(((((..(((.......)))..)))))((((..(((.......))).)))).(.(((((........(((...)))-.......-----------------..)))))).---- ( -25.43) >DroYak_CAF1 176598 118 - 1 CAUAUCAUUGAUGGGCUCCGUUCGCCACUCAAUGUCAACUGCAAAACAGGCAAUGACAGCGGGGCACACACACGACCACGCCCCCAUCCCAGAGGACACACACACUUACGCCCCCA--GA .....((((((..(((.......)))..))))))..............(((.......(.(((((..............)))))).(((....))).............)))....--.. ( -25.64) >consensus CAUAUCAUUGACGGGCUCCGUUCGCCACUCAAUGUCAACUGCAAAACAAGCAAUGACAGCGGGGCACACACACGACCACGCCCCCAUCCCAGGGGACAC__ACACUCACGCCCCCAA_AA ......(((((..(((.......)))..)))))((((..(((.......))).))))...(((((.......((....)).((((......))))..............)))))...... (-24.39 = -25.64 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:15 2006