Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,443,344 – 11,443,529 |
Length | 185 |
Max. P | 0.879784 |
Location | 11,443,344 – 11,443,455 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.54 |
Mean single sequence MFE | -37.36 |
Consensus MFE | -25.88 |
Energy contribution | -25.48 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.25 |
Mean z-score | -1.82 |
Structure conservation index | 0.69 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621815 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11443344 111 - 27905053 UUCGGGUGUCAGCCACAGACUUGGGAUCUCAAGAAGUGUGAGAAAGAAGGUGGGUG------GUUCCAUCGGGUGGUUCUUCUCGGAACUGGGAGAAGGAUCCACGGACAAGGAAA---G (((...((((((((((..((((....(((((.......)))))....))))..)))------))).......((((((((((((........)))))))).)))).)))).)))..---. ( -38.00) >DroSec_CAF1 183301 111 - 1 UUCGGGUGUCAGCCACAGACUUGGGAUCUCAAGAAGUGUGAGAAAGAAGGUGGGUG------GUUCCAUCGGGUGGUUUUUCUCGGAACUGGGAGAAGGAUCCAUGGACGAGGAAU---G ((((((((..((((((..((((....(((((.......)))))....))))..)))------))).))))..((((((((((((........)))))))).))))...))))....---. ( -34.90) >DroSim_CAF1 177881 111 - 1 UUCGGGUGUCAGCCACAGACUUGGGAUCUCAAGAAGUGUGAGAAAGAAGGUGGGUG------GUUCCAUCGGGUGGUUCUUCUCGGAACUGAGAGAAGGAUCCACGGACGAGGAAA---G ((((((((..((((((..((((....(((((.......)))))....))))..)))------))).))))..((((((((((((........)))))))).))))...))))....---. ( -39.90) >DroEre_CAF1 172729 117 - 1 UUCGGGUGUCAGCCGCAGACUUGGGAUCUCGAAAAGUGUGAGACAGUGGGUGGUUGUUCCCAGUUCCAUUGGGUGGUUUUUCUCGGAACUGGGAUAGGGAUCCGUGGACAGGGAGUA--- ..(((((.((((((((..(((...(.(((((.......)))))))))..))))))..((((((((((...(((........)))))))))))))..)).))))).............--- ( -39.20) >DroYak_CAF1 176258 113 - 1 UUCGGGUGUCAGCCACAGACUUGGGAUCUCGAAAAGUGCGAGAAAGUGGGUGGUUGUU-------CCAUUGGGUGGUUUUUCUGGGAACCGGGAUAAGGAUCCAGGGACAAGGAAUCAGG ....(((..(((((((..((((....(((((.......)))))))))..))))))(((-------((..(((((..((.((((((...)))))).))..))))))))))..)..)))... ( -34.80) >consensus UUCGGGUGUCAGCCACAGACUUGGGAUCUCAAGAAGUGUGAGAAAGAAGGUGGGUG______GUUCCAUCGGGUGGUUUUUCUCGGAACUGGGAGAAGGAUCCACGGACAAGGAAU___G (((...((((..((............(((((.......))))).....((((((..........))))))))((((((((((((........)))))))).)))).)))).)))...... (-25.88 = -25.48 + -0.40)
Location | 11,443,415 – 11,443,529 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -33.62 |
Consensus MFE | -25.76 |
Energy contribution | -25.76 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.10 |
Mean z-score | -2.43 |
Structure conservation index | 0.77 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11443415 114 - 27905053 UCAUAUUUAAGAAAAAUAUUUGUUUAUAUGUAGAUAAAUUCGGCAUAGGAAGCAGAUUCGGGUGGCU------GAUUCCAUUCGGGUGUCAGCCACAGACUUGGGAUCUCAAGAAGUGUG .(((((((.........((((((((.(((((.((.....)).)))))..))))))))((..((((((------(((.((.....)).))))))))).))(((((....)))))))))))) ( -36.80) >DroSec_CAF1 183372 114 - 1 UCAUAUUUAAGAAAAAUAUUUGUUUAUAUGUAGAUAAAUUCGGCAUAGGAAGCAGAUUCGGGUGGCU------GAUUCCAUUCGGGUGUCAGCCACAGACUUGGGAUCUCAAGAAGUGUG .(((((((.........((((((((.(((((.((.....)).)))))..))))))))((..((((((------(((.((.....)).))))))))).))(((((....)))))))))))) ( -36.80) >DroSim_CAF1 177952 114 - 1 UCAUAUUUAAGAAAAAUAUUUGUUUAUAUGUAGAUAAAUUCGGCAUAGGAAGCAGAUUCGAGUGGCU------GAUUCCAUUCGGGUGUCAGCCACAGACUUGGGAUCUCAAGAAGUGUG .(((((((.........((((((((.(((((.((.....)).)))))..))))))))....((((((------(((.((.....)).)))))))))...(((((....)))))))))))) ( -36.50) >DroEre_CAF1 172806 120 - 1 UCAUAUUUAAGAAAAAUAUUUGUUUAUAUGUAGAUAAAUUCGGCAUAGGAGGCAGAUUUGGGUGGCUUUGGUGGAUUCCAUUCGGGUGUCAGCCGCAGACUUGGGAUCUCGAAAAGUGUG ...(((((((.......((((((((.(((((.((.....)).)))))..)))))))))))))))(((((...((((((((.((.(((....)))...))..))))))))...)))))... ( -28.41) >DroYak_CAF1 176331 114 - 1 UCAUAUUUAAGAAAAAUAUUUGUUUAUAUGUAGAUAAAUUCGGCAUAGGAGGCAGAUUCGGGUGGCU------GCUUCCAUUCGGGUGUCAGCCACAGACUUGGGAUCUCGAAAAGUGCG .....((((((......((((((((.(((((.((.....)).)))))..))))))))((..((((((------((.(((....))).).))))))).))))))))............... ( -29.60) >consensus UCAUAUUUAAGAAAAAUAUUUGUUUAUAUGUAGAUAAAUUCGGCAUAGGAAGCAGAUUCGGGUGGCU______GAUUCCAUUCGGGUGUCAGCCACAGACUUGGGAUCUCAAGAAGUGUG .(((((((.........((((((((.(((((.((.....)).)))))..))))))))((..((((((......(((.((.....)).))))))))).))(((((....)))))))))))) (-25.76 = -25.76 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:14 2006