Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,443,217 – 11,443,313 |
Length | 96 |
Max. P | 0.984998 |
Location | 11,443,217 – 11,443,313 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.67 |
Mean single sequence MFE | -21.92 |
Consensus MFE | -18.88 |
Energy contribution | -18.88 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.86 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.803360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11443217 96 + 27905053 CUAAUCCCGGCCUGAAAGUGACAAAGCCAACGCCUUCAGACAAUGAAAUUUGCGAGCCGGGGAAAAUUGAAAU------------------GAAA------AUGAAAAUUCAAGAACUUG ....((((((((((((.(((..........))).))))).(((......)))...)))))))..........(------------------(((.------.......))))........ ( -20.80) >DroSec_CAF1 183162 102 + 1 CUAAUCCCGGCCUGAAAGUGACAAAGCCAACGCCUUCAGACAAUGAAAUUUGCGAGCCGGGGAAAAUUGAAAU------------------GAAAAUGAAAAUGAAAAUUCAAGAACUUG ....((((((((((((.(((..........))).))))).(((......)))...)))))))....(((((..------------------....((....)).....)))))....... ( -22.00) >DroSim_CAF1 177748 96 + 1 CUAAUCCCGGCCUGAAAGUGACAAAGCCAACGCCUUCAGACAAUGAAAUUUGCGAGCCGGGGAAAAUUGAAAU------------------GAAA------AUGAAAAUUCAAGAACUUG ....((((((((((((.(((..........))).))))).(((......)))...)))))))..........(------------------(((.------.......))))........ ( -20.80) >DroEre_CAF1 172578 119 + 1 CUAAUCCCGGCCUGAAAGUGACAAAGCCAACGCCUUCAGACAAUGAAAUUUGCGAGCCGGG-AAAAUUGAAACGAAAACGAAAAUGGAAAUGAAAAUGAAAAUGAAAAUUCAAGAACUUG ....((((((((((((.(((..........))).))))).(((......)))...))))))-)...(((((.((....))...((....)).................)))))....... ( -22.30) >DroYak_CAF1 176111 107 + 1 CUAAUCCCGGCCUGAAAGUGACAAAGCCAACGCCUUCAGACAAUGAAAUUUGCGAGCCGGG-AAAAUUGAAAUGA------------GGAUGAGAAUGAAAAUGAAAAUUCAAGAACUUG ....((((((((((((.(((..........))).))))).(((......)))...))))))-)............------------((((....((....))....))))......... ( -23.70) >consensus CUAAUCCCGGCCUGAAAGUGACAAAGCCAACGCCUUCAGACAAUGAAAUUUGCGAGCCGGGGAAAAUUGAAAU__________________GAAAAUGAAAAUGAAAAUUCAAGAACUUG .....(((((((((((.(((..........))).))))).(((......)))...))))))........................................................... (-18.88 = -18.88 + 0.00)
Location | 11,443,217 – 11,443,313 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.67 |
Mean single sequence MFE | -24.02 |
Consensus MFE | -22.18 |
Energy contribution | -22.18 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 0.92 |
SVM decision value | 1.99 |
SVM RNA-class probability | 0.984998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11443217 96 - 27905053 CAAGUUCUUGAAUUUUCAU------UUUC------------------AUUUCAAUUUUCCCCGGCUCGCAAAUUUCAUUGUCUGAAGGCGUUGGCUUUGUCACUUUCAGGCCGGGAUUAG ........((((.......------.)))------------------)...........((((((..((((......))))(((((((...((((...)))))))))))))))))..... ( -23.50) >DroSec_CAF1 183162 102 - 1 CAAGUUCUUGAAUUUUCAUUUUCAUUUUC------------------AUUUCAAUUUUCCCCGGCUCGCAAAUUUCAUUGUCUGAAGGCGUUGGCUUUGUCACUUUCAGGCCGGGAUUAG ........((((........)))).....------------------............((((((..((((......))))(((((((...((((...)))))))))))))))))..... ( -23.50) >DroSim_CAF1 177748 96 - 1 CAAGUUCUUGAAUUUUCAU------UUUC------------------AUUUCAAUUUUCCCCGGCUCGCAAAUUUCAUUGUCUGAAGGCGUUGGCUUUGUCACUUUCAGGCCGGGAUUAG ........((((.......------.)))------------------)...........((((((..((((......))))(((((((...((((...)))))))))))))))))..... ( -23.50) >DroEre_CAF1 172578 119 - 1 CAAGUUCUUGAAUUUUCAUUUUCAUUUUCAUUUCCAUUUUCGUUUUCGUUUCAAUUUU-CCCGGCUCGCAAAUUUCAUUGUCUGAAGGCGUUGGCUUUGUCACUUUCAGGCCGGGAUUAG ........((((........)))).................................(-((((((..((((......))))(((((((...((((...)))))))))))))))))).... ( -24.80) >DroYak_CAF1 176111 107 - 1 CAAGUUCUUGAAUUUUCAUUUUCAUUCUCAUCC------------UCAUUUCAAUUUU-CCCGGCUCGCAAAUUUCAUUGUCUGAAGGCGUUGGCUUUGUCACUUUCAGGCCGGGAUUAG ........((((........)))).........------------............(-((((((..((((......))))(((((((...((((...)))))))))))))))))).... ( -24.80) >consensus CAAGUUCUUGAAUUUUCAUUUUCAUUUUC__________________AUUUCAAUUUUCCCCGGCUCGCAAAUUUCAUUGUCUGAAGGCGUUGGCUUUGUCACUUUCAGGCCGGGAUUAG ...........................................................((((((..((((......))))(((((((...((((...)))))))))))))))))..... (-22.18 = -22.18 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:12 2006