Locus 4321

Sequence ID 3R_DroMel_CAF1
Location 11,442,098 – 11,442,218
Length 120
Max. P 0.734966
window7059

overview

Window 9

Location 11,442,098 – 11,442,218
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.50
Mean single sequence MFE -28.73
Consensus MFE -26.56
Energy contribution -26.60
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.25
Structure conservation index 0.92
SVM decision value 0.43
SVM RNA-class probability 0.734966
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11442098 120 + 27905053
AAACUGAAGACAGCCCACUGGGGAGCCAUCAAUUCAUCAAAAUGCUGGGCUCUAAAAAUAGUGCGAGUGAACUUCGAUAAAAUGCCAAAAGUUCUCUACACGGCGGCACUUCAAAGUCAU
....(((((...((((((((.((((((....(((......)))....)))))).....)))))..((.((((((..............)))))).))....)))....)))))....... ( -28.54)
>DroSec_CAF1 182058 120 + 1
AAACUGAAGACAGCCCACUGGGGAGCCAUCAAUUCAUCAAAAUGCUGGGCUCUAUAAAUAGUGCGAGUAAACUUCGAUAAAAUGCCAAAAGUUCUCUACACGGCGGCACUUCAAAGUCAU
....(((((...((((((((.((((((....(((......)))....)))))).....)))))((((.....)))).......(((...((....))....)))))).)))))....... ( -26.60)
>DroSim_CAF1 176277 120 + 1
AAACUGAAGACAGCCCACUGGGGAGCCAUCAAUUCAUCAAAAUGCUGGGCUCUAUAAAUAGUGCGAGUGAACUUCGAUAAAAUGCCAAAAGUUCUCUACACGGCGGCACUUCAAAGCCAU
............((((((((.((((((....(((......)))....)))))).....)))))..((.((((((..............)))))).))....)))(((........))).. ( -28.74)
>DroEre_CAF1 171534 120 + 1
AAACUGAAGACAGCCCACUGGGGAGCCAUCAAUUCAUCAAAAUGCUGGGCUCUAUAAAUAGUGCUAGUGAACUUCGAUAAAAUGCCAAAAGUUCUCUGCGCAGCGGCACUUCAAAGCCAU
....(((((...((((.....((((((....(((......)))....)))))).......((((.((.((((((..............)))))).)))))).).))).)))))....... ( -30.34)
>DroYak_CAF1 174987 120 + 1
AAACUGAAGACAGCCCACUGGGGAGCCAUCAAUUCAUCAAAAUGCUGGGCUCUAUAAAUAGUGCUGGUGAACUUCGAUAAAAUGCCAAAAGUUCUCUACACAGCGGCACUUCAAAGCCUU
....(((((...(((.((((.((((((....(((......)))....)))))).....))))((((((((((((..............))))))...)).))))))).)))))....... ( -29.44)
>consensus
AAACUGAAGACAGCCCACUGGGGAGCCAUCAAUUCAUCAAAAUGCUGGGCUCUAUAAAUAGUGCGAGUGAACUUCGAUAAAAUGCCAAAAGUUCUCUACACGGCGGCACUUCAAAGCCAU
....(((((...((((((((.((((((....(((......)))....)))))).....)))))..((.((((((..............)))))).)).......))).)))))....... (-26.56 = -26.60 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:06 2006