Locus 432

Sequence ID 3R_DroMel_CAF1
Location 1,624,011 – 1,624,124
Length 113
Max. P 0.946307
window702 window703

overview

Window 2

Location 1,624,011 – 1,624,124
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.83
Mean single sequence MFE -39.02
Consensus MFE -22.19
Energy contribution -23.00
Covariance contribution 0.81
Combinations/Pair 1.43
Mean z-score -2.47
Structure conservation index 0.57
SVM decision value 1.30
SVM RNA-class probability 0.939196
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1624011 113 + 27905053
GUGUUUCCGUCCCUGCCCAAGCCGCCAUCCGUUUUGCAGGCGGCUGCCAAUGGGACCAUACAGUUCACUCUGGACAGUCUUCUACGAGCCGCUCUGCAGAACU-----AAACGGAACC--
....((((((....((....))........(((((((((((((((.(....(((((....(((......)))....)))))....))))))).))))))))).-----..))))))..-- ( -38.50)
>DroGri_CAF1 3691 107 + 1
CUAUUUCCGGCGCUGCCCAAGCCGCCAUCCGUUCUGCAGGCAUCUGCGAAUGGAACAAUCCAAUUCACGCUGGACAGCCUGCUGCGUGCCGCUCUGCAGAAUU-----AAAC--------
........((((((.....)).))))....(((((((((((.........((((....))))...(((((.((....))....)))))..)).))))))))).-----....-------- ( -36.10)
>DroWil_CAF1 3666 113 + 1
AAGUUUCCGGCGUUGCCCAAGCCGCCAUCCGUUUUACAGGCAACUGCCAGUGGCACCAUUCAGUUUACAUUGGACAGCCUGCUGCGCGCCGCUUUGCAAAACU-----AAACGGAACC--
........((((..((....)))))).(((((((....(((....)))((((((....((((((....))))))(((....)))...))))))..........-----)))))))...-- ( -33.40)
>DroMoj_CAF1 3569 112 + 1
AAGUUUCCGGCGCUACCGAAACCCCCAUCCGUGCUGCAGGCGUCUGCCAACGGAACAAUCCAAUUCACAUUGGACAGCCUGCUGCGUGCUGCACUGCAGAACU-----AAGCCAAAU---
........(((.....................((.((((((.((((....))))....((((((....))))))..)))))).))((.((((...)))).)).-----..)))....--- ( -33.30)
>DroAna_CAF1 3447 118 + 1
ACGUUUCCGGCCCUGCCCAAGCCGCCAUCCGUUUUGCAGGCAGCUGCCAAUGGAACCAUCCAGCUAACGCUGGACAGUCUGCUACGAGCUGCUCUGCAGAACUAAACUAAACGGAACC--
....(((((((...((....)).)))....(((((((((((((((......(((....((((((....))))))...)))......)))))).)))))))))..........))))..-- ( -46.30)
>DroPer_CAF1 3221 115 + 1
AAAUUUCCGGCAUUACCGAAGCCGCCAUCCGUUCUGCAGGCAGCUGCCAAUGGAACCAUCCAGCUCACAUUGGAUAGUCUCCUGCGCGCUGCCCUGCAGAACU-----AAGCGGAACCAG
....(((((((.........)))((.....(((((((((((((((((....(((((.((((((......)))))).)).))).))).)))).)))))))))).-----..)))))).... ( -46.50)
>consensus
AAGUUUCCGGCGCUGCCCAAGCCGCCAUCCGUUCUGCAGGCAGCUGCCAAUGGAACCAUCCAGUUCACACUGGACAGCCUGCUGCGAGCCGCUCUGCAGAACU_____AAACGGAACC__
.......((((.........))))......((((((((((((.((((....((.....((((((....))))))...))....))).).))).))))))))).................. (-22.19 = -23.00 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 1,624,011 – 1,624,124
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.83
Mean single sequence MFE -45.95
Consensus MFE -32.72
Energy contribution -34.48
Covariance contribution 1.76
Combinations/Pair 1.44
Mean z-score -2.14
Structure conservation index 0.71
SVM decision value 1.36
SVM RNA-class probability 0.946307
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1624011 113 - 27905053
--GGUUCCGUUU-----AGUUCUGCAGAGCGGCUCGUAGAAGACUGUCCAGAGUGAACUGUAUGGUCCCAUUGGCAGCCGCCUGCAAAACGGAUGGCGGCUUGGGCAGGGACGGAAACAC
--.((((((((.-----.(((.(((((.((((((.((....((((((.(((......))).))))))......))))))))))))).)))....))).((....)).)))))(....).. ( -43.00)
>DroGri_CAF1 3691 107 - 1
--------GUUU-----AAUUCUGCAGAGCGGCACGCAGCAGGCUGUCCAGCGUGAAUUGGAUUGUUCCAUUCGCAGAUGCCUGCAGAACGGAUGGCGGCUUGGGCAGCGCCGGAAAUAG
--------....-----..((((((((.(((((..((((....))))...))((((((.(((....)))))))))...)))))))))))(((...((.((....)).)).)))....... ( -39.60)
>DroWil_CAF1 3666 113 - 1
--GGUUCCGUUU-----AGUUUUGCAAAGCGGCGCGCAGCAGGCUGUCCAAUGUAAACUGAAUGGUGCCACUGGCAGUUGCCUGUAAAACGGAUGGCGGCUUGGGCAACGCCGGAAACUU
--(((.((((((-----(((((.(((..(((((.(......))))))....)))))))))))))).))).(((((.((((((((.....((.....))...)))))))))))))...... ( -45.00)
>DroMoj_CAF1 3569 112 - 1
---AUUUGGCUU-----AGUUCUGCAGUGCAGCACGCAGCAGGCUGUCCAAUGUGAAUUGGAUUGUUCCGUUGGCAGACGCCUGCAGCACGGAUGGGGGUUUCGGUAGCGCCGGAAACUU
---.((((((..-----.((.((((...)))).))((.((((((((.((((((.((((......))))))))))))...)))))).((.((((.......)))))).))))))))..... ( -40.80)
>DroAna_CAF1 3447 118 - 1
--GGUUCCGUUUAGUUUAGUUCUGCAGAGCAGCUCGUAGCAGACUGUCCAGCGUUAGCUGGAUGGUUCCAUUGGCAGCUGCCUGCAAAACGGAUGGCGGCUUGGGCAGGGCCGGAAACGU
--(.((((.....(((..(((.(((((.((((((.((....(((((((((((....)))))))))))......))))))))))))).)))....)))(((((.....))))))))).).. ( -51.40)
>DroPer_CAF1 3221 115 - 1
CUGGUUCCGCUU-----AGUUCUGCAGGGCAGCGCGCAGGAGACUAUCCAAUGUGAGCUGGAUGGUUCCAUUGGCAGCUGCCUGCAGAACGGAUGGCGGCUUCGGUAAUGCCGGAAAUUU
(((((..((((.-----.((((((((((.((((((.((((..((((((((........))))))))..).))))).))))))))))))))....))))((....))...)))))...... ( -55.90)
>consensus
__GGUUCCGUUU_____AGUUCUGCAGAGCAGCACGCAGCAGACUGUCCAAUGUGAACUGGAUGGUUCCAUUGGCAGCUGCCUGCAAAACGGAUGGCGGCUUGGGCAGCGCCGGAAACUU
....((((..........(((((((((.(((((..((....(((((((((((....)))))))))))......)).))))))))))))))....(((.((....))...))))))).... (-32.72 = -34.48 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:01 2006