Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,440,750 – 11,440,860 |
Length | 110 |
Max. P | 0.937291 |
Location | 11,440,750 – 11,440,860 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.04 |
Mean single sequence MFE | -37.82 |
Consensus MFE | -31.32 |
Energy contribution | -31.72 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.85 |
Structure conservation index | 0.83 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11440750 110 - 27905053 ACAGUAGCAGCAGCAAGGAGUCGGCUUAAGUUGCGCCAAUGAAUUUAUGGUAGGGUCAGCCGGAAGUGCAGGCGAGUCC----------UGCAAAGGAGCCCAUGAAAAUGGCGUUCUAA .((...((.(((((...(((....)))..)))))))...))........((((((((.(((.........))))).)))----------)))...(((((((((....)))).))))).. ( -35.40) >DroSec_CAF1 180730 110 - 1 ACAGUAGCAGCAGCAAGGAGUCGGCUUAAGUUGCGCCAAUGAAUUUAUGGGAGGGUCAGCCGGAAGUGCAGGCGAGUCC----------UGCAAAGGAGCCCAUGAAAAUGGCGUUCUAA ..((.(((.(((((...(((....)))..)))))((((.....((((((((...(((.(((....).)).)))...(((----------(....)))).))))))))..))))))))).. ( -36.90) >DroSim_CAF1 174908 110 - 1 ACAGUAGCAGCAGCAAGGAGUCGGCUUAAGUUGCCCCAAUGAAUUUAUGGGAGGGUCAGCCGGAAGUGCAGGCGAGUCC----------UGCAAAGGAGCCCAUGAAAAUGGCGUUCUAA ............(((.(((.(((.((........((((.........)))).......(((....).)))).))).)))----------)))...(((((((((....)))).))))).. ( -35.90) >DroEre_CAF1 170203 110 - 1 GCAGUAGCAGCAGCCAGGAGUCGGCUUAAGUUGCGCCAAUGAAUUUAUGGGAGGGUCAGCCGAAAGUGCAGGCGAGUGC----------UGCCAAGGAGCCCAUGAAAAUGGCGUUCUAA (((((((((((((((.......))))...)))))(((..(((.(((....)))..)))(((....).)).)))...)))----------)))...(((((((((....)))).))))).. ( -40.90) >DroYak_CAF1 173604 120 - 1 ACAGUAGCAGCAGCAAGGAGUCGGCUUAAGUUGCGCCAAUGAAUUUAUGGGAGGGUCAGCCGGAAGUGCAGGCGAGUCCGGGGCAGUCUUGCAAAGGAGCCCAUGAAAAUGGCGUUCUAA ......((((((((...(((....)))..)))))(((..(((.(((....)))..))).(((((..((....))..)))))))).....)))...(((((((((....)))).))))).. ( -40.00) >consensus ACAGUAGCAGCAGCAAGGAGUCGGCUUAAGUUGCGCCAAUGAAUUUAUGGGAGGGUCAGCCGGAAGUGCAGGCGAGUCC__________UGCAAAGGAGCCCAUGAAAAUGGCGUUCUAA ......((((((((...(((....)))..)))))(((..(((.(((....)))..)))(((....).)).)))................)))...(((((((((....)))).))))).. (-31.32 = -31.72 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:01 2006