Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,440,271 – 11,440,423 |
Length | 152 |
Max. P | 0.995352 |
Location | 11,440,271 – 11,440,391 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.45 |
Mean single sequence MFE | -31.93 |
Consensus MFE | -29.90 |
Energy contribution | -29.30 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.17 |
Mean z-score | -1.67 |
Structure conservation index | 0.94 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11440271 120 + 27905053 GUGAUUCACCAGAUCCUUCCCCCCCCCCCCCUGUAGCAUUAUCGCUUUUAUUGCGUUUUAAUUUGGCUUGUCCUUUUCAGCGAGGCAUGCAAGGACAUGCAUCCAGGAUGUGGUCAAUAU ...(((.((((.(((((....................((((.(((.......)))...))))...((.(((((((..((((...)).)).))))))).))....))))).)))).))).. ( -28.30) >DroSec_CAF1 180257 112 + 1 GUGACUCACCAGAUCCUUUCC--------CCUGUAGCAUUAUCGCUUUUAUUGCGUUUUAAUUUGGCUUGUCCUUGUCAGCGAGGCAUGCAAGGACAUGCAUCCAGGAUGUGGUCAAUAU .......((((.(((((....--------........((((.(((.......)))...))))...((.(((((((((..((...))..))))))))).))....))))).))))...... ( -32.20) >DroSim_CAF1 174445 114 + 1 GAUACUCACCAGAUCCUUUCC------CCCCUGUAGCAUUAUCGCUUUUAUUGCGUUUUAAUUUGGCUUGUCCUUGUCAGCGAGGCAUGCAAGGACAUGCAUCCAGGAUGUGGUCAAUAU .......((((.(((((....------..........((((.(((.......)))...))))...((.(((((((((..((...))..))))))))).))....))))).))))...... ( -32.20) >DroEre_CAF1 169728 109 + 1 GUGACUCGCCAGAUUCCUUCC--------CCU---GCAUUAUCGCCUUUAUUGCGUUUUAAUUUGGCUUGUCCUUGUCUGUGAGGCAUGCAAGGACAUGCAUCCAGGAUGUGGCCAAUAU .......((((.((.(((...--------..(---(((.....(((...((((.....))))..))).(((((((((.((.....)).)))))))))))))...))))).))))...... ( -33.20) >DroYak_CAF1 173132 102 + 1 GUGACCCGCCAGAUCCCUGCC--------CC----------UCGCUUUUAUUGCGUUUUAAUUUGGCUUGUCCUUGUCUGUGAGGCAUGCAAGGACAUGCAUCCAGGAUGUGGUCAAUAU .(((((.(((((((.......--------..----------.(((.......))).....))))))).(((((((((.((.....)).))))))))).(((((...)))))))))).... ( -33.76) >consensus GUGACUCACCAGAUCCUUUCC________CCUGUAGCAUUAUCGCUUUUAUUGCGUUUUAAUUUGGCUUGUCCUUGUCAGCGAGGCAUGCAAGGACAUGCAUCCAGGAUGUGGUCAAUAU .......((((.((((..........................(((.......)))..........((.(((((((((..((...))..))))))))).)).....)))).))))...... (-29.90 = -29.30 + -0.60)
Location | 11,440,271 – 11,440,391 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.45 |
Mean single sequence MFE | -33.29 |
Consensus MFE | -26.84 |
Energy contribution | -26.64 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.15 |
Mean z-score | -2.19 |
Structure conservation index | 0.81 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961148 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11440271 120 - 27905053 AUAUUGACCACAUCCUGGAUGCAUGUCCUUGCAUGCCUCGCUGAAAAGGACAAGCCAAAUUAAAACGCAAUAAAAGCGAUAAUGCUACAGGGGGGGGGGGGGAAGGAUCUGGUGAAUCAC ..(((.((((.(((((..(((((......))))).((((.(((....((.....)).........(((.......))).........))).))))........))))).)))).)))... ( -33.10) >DroSec_CAF1 180257 112 - 1 AUAUUGACCACAUCCUGGAUGCAUGUCCUUGCAUGCCUCGCUGACAAGGACAAGCCAAAUUAAAACGCAAUAAAAGCGAUAAUGCUACAGG--------GGAAAGGAUCUGGUGAGUCAC ....(((((((..((((...(((((((((((((.((...)))).)))))))..............(((.......)))...))))..))))--------(((.....))).))).)))). ( -33.90) >DroSim_CAF1 174445 114 - 1 AUAUUGACCACAUCCUGGAUGCAUGUCCUUGCAUGCCUCGCUGACAAGGACAAGCCAAAUUAAAACGCAAUAAAAGCGAUAAUGCUACAGGGG------GGAAAGGAUCUGGUGAGUAUC (((((.((((.(((((..(((((......))))).((((.(((....((.....)).........(((.......))).........))).))------))..))))).)))).))))). ( -35.10) >DroEre_CAF1 169728 109 - 1 AUAUUGGCCACAUCCUGGAUGCAUGUCCUUGCAUGCCUCACAGACAAGGACAAGCCAAAUUAAAACGCAAUAAAGGCGAUAAUGC---AGG--------GGAAGGAAUCUGGCGAGUCAC ..(((.((((..((((...((((((((((((..((.....))..)))))))..(((..................)))....))))---)..--------...))))...)))).)))... ( -32.47) >DroYak_CAF1 173132 102 - 1 AUAUUGACCACAUCCUGGAUGCAUGUCCUUGCAUGCCUCACAGACAAGGACAAGCCAAAUUAAAACGCAAUAAAAGCGA----------GG--------GGCAGGGAUCUGGCGGGUCAC ....(((((....(((....((.((((((((..((.....))..)))))))).))..........(((.......))))----------))--------(.(((....))).).))))). ( -31.90) >consensus AUAUUGACCACAUCCUGGAUGCAUGUCCUUGCAUGCCUCGCUGACAAGGACAAGCCAAAUUAAAACGCAAUAAAAGCGAUAAUGCUACAGG________GGAAAGGAUCUGGUGAGUCAC ..(((.((((.(((((....((.((((((((...(.....)...)))))))).))..........(((.......))).........................))))).)))).)))... (-26.84 = -26.64 + -0.20)
Location | 11,440,311 – 11,440,423 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.06 |
Mean single sequence MFE | -26.64 |
Consensus MFE | -23.04 |
Energy contribution | -23.08 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.15 |
Structure conservation index | 0.86 |
SVM decision value | 2.57 |
SVM RNA-class probability | 0.995352 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11440311 112 - 27905053 AACAUGCUACAUUUCGGGCCCAACACCCCC--------GUAUAUUGACCACAUCCUGGAUGCAUGUCCUUGCAUGCCUCGCUGAAAAGGACAAGCCAAAUUAAAACGCAAUAAAAGCGAU ....((((......((((.........)))--------)..(((((.(((.....)))..((.(((((((....((...))....))))))).))............)))))..)))).. ( -24.30) >DroSec_CAF1 180289 112 - 1 AACAUGCUACAUUUCGGGCCCAUCACCCCC--------GUAUAUUGACCACAUCCUGGAUGCAUGUCCUUGCAUGCCUCGCUGACAAGGACAAGCCAAAUUAAAACGCAAUAAAAGCGAU ....((((......((((.........)))--------)..(((((.(((.....)))..((.((((((((((.((...)))).)))))))).))............)))))..)))).. ( -27.60) >DroSim_CAF1 174479 112 - 1 AACAUGCUACAUUUCGGGCCCAACACCCAC--------GUAUAUUGACCACAUCCUGGAUGCAUGUCCUUGCAUGCCUCGCUGACAAGGACAAGCCAAAUUAAAACGCAAUAAAAGCGAU ....((((.......(((.......)))..--------...(((((.(((.....)))..((.((((((((((.((...)))).)))))))).))............)))))..)))).. ( -27.40) >DroEre_CAF1 169757 110 - 1 AACAUGCUACAUUUCGGGCCCAACACCC----------CUAUAUUGGCCACAUCCUGGAUGCAUGUCCUUGCAUGCCUCACAGACAAGGACAAGCCAAAUUAAAACGCAAUAAAGGCGAU ....((((.......(((........))----------)....(((((..((((...))))..((((((((..((.....))..)))))))).)))))................)))).. ( -26.80) >DroYak_CAF1 173155 119 - 1 AACAUGCUACAUUUCGGGCCCAACACCCACCCACCUAUGUAUAUUGACCACAUCCUGGAUGCAUGUCCUUGCAUGCCUCACAGACAAGGACAAGCCAAAUUAAAACGCAAUAAAAGCGA- ....((((((((...(((...........)))....)))).(((((.(((.....)))..((.((((((((..((.....))..)))))))).))............)))))..)))).- ( -27.10) >consensus AACAUGCUACAUUUCGGGCCCAACACCCAC________GUAUAUUGACCACAUCCUGGAUGCAUGUCCUUGCAUGCCUCGCUGACAAGGACAAGCCAAAUUAAAACGCAAUAAAAGCGAU ....((((.......(((.......))).............(((((.(((.....)))..((.((((((((...(.....)...)))))))).))............)))))..)))).. (-23.04 = -23.08 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:53 2006