Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,438,985 – 11,439,105 |
Length | 120 |
Max. P | 0.793814 |
Location | 11,438,985 – 11,439,105 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.92 |
Mean single sequence MFE | -28.25 |
Consensus MFE | -24.86 |
Energy contribution | -24.38 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.16 |
Mean z-score | -1.47 |
Structure conservation index | 0.88 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.793814 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11438985 120 + 27905053 AACACAAAAAAUAACCCUCGUCCUCAGGCGGCAGCUUUCACGCGGCUUUUUUCAAUUUGUAUCGCGAAAAAACACAGAAAGGAGGGAAAACUCAUUCAACUGUGACAUUUUGUGUUUUGU (((((((((.....(((((((((....).)))..(((((.....(.(((((((............))))))))...)))))))))).....((((......))))..))))))))).... ( -26.40) >DroSec_CAF1 179082 120 + 1 AACACAAAAAAUAACCCUCGUCCUCAGGCGGCAGCUUUCACGCGGCUUUUUUCAAUUUGUAUCGCGAAAAAAUACAAAAAGGAGGAAAAACUCAUUCAACUGUGACAUUUUGUGUUUUGU (((((((((...........(((((((((.((.........)).)))).......(((((((.........)))))))...))))).....((((......))))..))))))))).... ( -25.80) >DroSim_CAF1 173260 120 + 1 AACACAAAAAAUAACCCUCGUCCUCAGGCGGCAGCUUUCACGCGGCUUUUUUCAAUUUGUAUCGCGAAAAAAUACAAAAAGGAGGAAAAACUCAUUCAACUGUGACAUUUUGUGUUUUGU (((((((((...........(((((((((.((.........)).)))).......(((((((.........)))))))...))))).....((((......))))..))))))))).... ( -25.80) >DroEre_CAF1 168630 119 + 1 AACACAAAAUAUAACCCUCGUCCUCAGGCGGCAGCUUUCACGCGGCUUUUUUCAAUUUGUAUCGCGAAAAAA-GCGGAAAGGAGGAAAAACUCAUUCAACUGUGACAUUUUGUGUUUUGU ((((((((((.....((((.(((....(((..........))).(((((((((............)))))))-)))))...))))......((((......)))).)))))))))).... ( -32.00) >DroYak_CAF1 171979 120 + 1 AACACAAAAUAUAACCCUCGUCCUCAGGCGGCAGCUUUCACGCGGCUUUUUUCAAUUUGUGUCGCGAAAAAAUACGGAAAGGAGGAAAAACUCAUUCAACUGUGACAUUUUGUGUUUUGU ((((((((((.....((((.(((..((((....))))...((((((..............)))))).........)))...))))......((((......)))).)))))))))).... ( -31.24) >consensus AACACAAAAAAUAACCCUCGUCCUCAGGCGGCAGCUUUCACGCGGCUUUUUUCAAUUUGUAUCGCGAAAAAAUACAGAAAGGAGGAAAAACUCAUUCAACUGUGACAUUUUGUGUUUUGU (((((((((...........(((((((((.((.........)).)))).......(((((((.........)))))))...))))).....((((......))))..))))))))).... (-24.86 = -24.38 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:50 2006