| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,437,828 – 11,437,978 |
| Length | 150 |
| Max. P | 0.994156 |
| Location | 11,437,828 – 11,437,947 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.27 |
| Mean single sequence MFE | -42.02 |
| Consensus MFE | -37.41 |
| Energy contribution | -38.29 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.89 |
| SVM decision value | 2.45 |
| SVM RNA-class probability | 0.994156 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11437828 119 + 27905053 GUGGUUGGAAGGUGGUUGGGCUGGCUGGCCAGACGU-ACCGGUCAGCGCGGUUUUGUAAAACGUUUAAUUGCAAUUUGAAAAGCAACCUUCAAGGCCCGGCUGGGGCAUACAAGGGUUGC (..((((((..((....(((((((((((((......-...))))))).))))))......)).))))))..)..........((((((((....((((.....)))).....)))))))) ( -43.00) >DroSec_CAF1 177917 110 + 1 GUGGUUGGAAGU---------UGGCUGGCCAGACGA-ACCGGUCAGCGCGGUUUUGUAAAACGUUUAAUUGCAAUUUGAAAAGCAACCUUCAAGGCCCGACUGGGGCAUACAAGGGUUGC (..((((((.((---------(((((((........-.)))))))))...((((....)))).))))))..)..........((((((((....((((.....)))).....)))))))) ( -37.90) >DroSim_CAF1 172122 110 + 1 GUGGUUGGAAGU---------UGGCUGGCCAGACGA-ACCGGUCAGCGCGGUUUUGUAAAACGUUUAAUUGCAAUUUGAAAAGCAACCUUCAAGGCCCGGCUGGGGCAUACAAGGGUUGC (..((((((.((---------(((((((........-.)))))))))...((((....)))).))))))..)..........((((((((....((((.....)))).....)))))))) ( -37.90) >DroEre_CAF1 167454 118 + 1 GUGGUUGGAAGGUGGCCAAGCUGGUUGGCCAGACGA-ACCGGUCAGCGCGGUUUG-UAAAACGUUUAAUUGCAAUUUGAAAAGCAACCUUCAAGGCCCGGCUGGGGCACACAAGGGUUGC (..((((((.(.(((((((.....))))))).((((-(((((....).)))))))-)....).))))))..)..........((((((((....((((.....)))).....)))))))) ( -45.70) >DroYak_CAF1 170771 117 + 1 GUGGUUGGAAGAUGGCU-GGCUGGUUGGCCAGACGAAACCGGUCAGCGCGGUUUU-GUAAACGUUUAAUUGCAAU-UGAAAAGCAACCUUCAAGGCCCGGCUGGGGCACACAAGGGUUGC (..((((((.(....((-((((....))))))((((((((((....).)))))))-))...).))))))..)...-......((((((((....((((.....)))).....)))))))) ( -45.60) >consensus GUGGUUGGAAGGUGG____GCUGGCUGGCCAGACGA_ACCGGUCAGCGCGGUUUUGUAAAACGUUUAAUUGCAAUUUGAAAAGCAACCUUCAAGGCCCGGCUGGGGCAUACAAGGGUUGC (..((((((.........((((((((((((.(......).))))))).)))))..........))))))..)..........((((((((....((((.....)))).....)))))))) (-37.41 = -38.29 + 0.88)
| Location | 11,437,867 – 11,437,978 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 96.40 |
| Mean single sequence MFE | -37.33 |
| Consensus MFE | -34.90 |
| Energy contribution | -34.90 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11437867 111 + 27905053 GGUCAGCGCGGUUUUGUAAAACGUUUAAUUGCAAUUUGAAAAGCAACCUUCAAGGCCCGGCUGGGGCAUACAAGGGUUGCUGCUGAUACUGCCGUUGCUGUGUUCAGGAUU .((((((((((((.((.....))...)))))).........(((((((((....((((.....)))).....)))))))))))))))..........(((....))).... ( -36.00) >DroSec_CAF1 177947 111 + 1 GGUCAGCGCGGUUUUGUAAAACGUUUAAUUGCAAUUUGAAAAGCAACCUUCAAGGCCCGACUGGGGCAUACAAGGGUUGCUGCUGAUGCUGCCGUUGCUGUGUUCAGGAUU ((.(((((((((.((((((.........)))))).......(((((((((....((((.....)))).....))))))))))))).)))))))....(((....))).... ( -37.40) >DroSim_CAF1 172152 111 + 1 GGUCAGCGCGGUUUUGUAAAACGUUUAAUUGCAAUUUGAAAAGCAACCUUCAAGGCCCGGCUGGGGCAUACAAGGGUUGCUGCUGAUGCUGCCGUUGCUGUGUUCAGGAUU ((.(((((((((.((((((.........)))))).......(((((((((....((((.....)))).....))))))))))))).)))))))....(((....))).... ( -37.40) >DroYak_CAF1 170810 109 + 1 GGUCAGCGCGGUUUU-GUAAACGUUUAAUUGCAAU-UGAAAAGCAACCUUCAAGGCCCGGCUGGGGCACACAAGGGUUGCUGCUGAUGCUGCCGUUGCUGUGUCCAGGAUU ((.(((((((((.((-((((........)))))).-.....(((((((((....((((.....)))).....)))))))))((....)).)))).)))))...))...... ( -38.50) >consensus GGUCAGCGCGGUUUUGUAAAACGUUUAAUUGCAAUUUGAAAAGCAACCUUCAAGGCCCGGCUGGGGCAUACAAGGGUUGCUGCUGAUGCUGCCGUUGCUGUGUUCAGGAUU .((((((((((((.............)))))).........(((((((((....((((.....)))).....)))))))))))))))..........(((....))).... (-34.90 = -34.90 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:49 2006