Locus 4313

Sequence ID 3R_DroMel_CAF1
Location 11,436,935 – 11,437,055
Length 120
Max. P 0.993776
window7035

overview

Window 5

Location 11,436,935 – 11,437,055
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.30
Mean single sequence MFE -34.97
Consensus MFE -32.06
Energy contribution -32.86
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.92
SVM decision value 2.42
SVM RNA-class probability 0.993776
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11436935 120 - 27905053
AAGGGGCACGUGUUUAGCAAUUCGCUGCGGUUUGUCAGCAAUUGCAACCCUCCCGAAAGAAAUACCUUGCAGCCUUGCUGGCAGAAAAAAUACCUCUUGCAACUUGCAACUCAACCCCUG
.(((((...((((((.(((......)))..(((((((((((((((((......(....).......))))))..)))))))))))..))))))...((((.....)))).....))))). ( -37.42)
>DroSec_CAF1 177023 118 - 1
AAGGGGCACGUGUUUAGCAAUUCGCUGCGGUUUGUCAGCAAUUGCAACCCUCCCGAAUGAAAUACCUUGCAGCCUUGCUGGCAGAAAAAAUACC--UUGCAACUUUCAACUCAACCCCUG
.(((((...((((((.(((......)))..(((((((((((((((((...................))))))..)))))))))))..)))))).--(((.......))).....))))). ( -29.81)
>DroSim_CAF1 171220 118 - 1
AAGGGGCACGUGUUUAGCAAUUCGCUGCGGUUUGUCAGCAAUUGCAACCCUCCCGAAUGAAAUACCUUGCAGCCUUGCUGGCAGAAAAAAUACC--UUGCAACUUGCAACUCAACCCCUG
.(((((...((((((.(((......)))..(((((((((((((((((...................))))))..)))))))))))..)))))).--((((.....)))).....))))). ( -34.81)
>DroEre_CAF1 166596 118 - 1
AAGGGGCACGUGUUUAGCAAUUCGCUGCGGUUUGUCAGCAAUUGCAACCCUCCCGAAAGAAAUUCCUUGCAGCCUGGCUGGCAGAAAAAAUACC--UUGCAACUUGCAACUCAACCCCUG
.(((((...((((((.(((......)))..(((((((((..((((((......(....).......))))))....)))))))))..)))))).--((((.....)))).....))))). ( -35.62)
>DroYak_CAF1 169465 117 - 1
AAGGGGCACGUGUUUAGCAAUUCGCUGCGGUUUGUCAGCAAUGGCAACCCUCCCGAAAGCAAUACCUUGCAGCCUGGCUGGCAGAA-AAAUACC--UUGCAACUUGCAACCCAACCCCUG
.(((((...((((((.(((......)))..(((((((((...(((....(....)...((((....)))).)))..))))))))).-)))))).--((((.....)))).....))))). ( -37.20)
>consensus
AAGGGGCACGUGUUUAGCAAUUCGCUGCGGUUUGUCAGCAAUUGCAACCCUCCCGAAAGAAAUACCUUGCAGCCUUGCUGGCAGAAAAAAUACC__UUGCAACUUGCAACUCAACCCCUG
.(((((...((((((.(((......)))..(((((((((((((((((......(....).......))))))..)))))))))))..))))))...((((.....)))).....))))). (-32.06 = -32.86 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:44 2006