Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,435,956 – 11,436,062 |
Length | 106 |
Max. P | 0.974050 |
Location | 11,435,956 – 11,436,062 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.21 |
Mean single sequence MFE | -28.94 |
Consensus MFE | -22.06 |
Energy contribution | -22.46 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.48 |
Structure conservation index | 0.76 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.974050 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11435956 106 + 27905053 -------CUGGAGGAGCUUCCAGCAGACACACACAAC-------AAAUAACGCUUAAAAGUUGCUCGCCUCACCUGGCCAGCAUCCUUUGGUGUCCUCGCUUCCCUCCUCACCACCCCUU -------...((((((.....(((.(((((.((....-------....(((........)))(((.(((......))).)))......)))))))...)))...)))))).......... ( -28.40) >DroSec_CAF1 176064 105 + 1 -------CUGGAGGAGCUUCCAGCAGACACACACAAC-------AAAUAACGUUUAAAAGUUGCUCGCCUCACCUGGCCAGCAUCCUUUGGUGUCCUCGCUUCCAUCCUCACCACCCCU- -------...(((((......(((.(((((....(((-------.......)))..((((.((((.(((......))).))))..)))).)))))...)))....))))).........- ( -27.20) >DroSim_CAF1 170261 105 + 1 -------CUGGAGGAGCUUCCAGCAGACACACACAAC-------AAAUAACGCUUAAAAGUUGCUCGCCUCACCUGGCCAGCAUCCUUUGGUGUCCUCGCUUCCAUCCUCACCACCCCU- -------...(((((......(((.(((((.((....-------....(((........)))(((.(((......))).)))......)))))))...)))....))))).........- ( -26.50) >DroEre_CAF1 165656 100 + 1 AGCAGCUCUGGAGGAGCUUCCAGGAGACACACACAAC-------AAACAACGCUUAAAUGUGGCUCGCCUCACCUGGCCAGCAUCCUUUGGUGUCCUCGUUUCGCUC------------- (((....((((((....))))))(((((((((.(((.-------......(((......)))(((.(((......))).))).....)))))))....)))))))).------------- ( -30.30) >DroYak_CAF1 168458 108 + 1 AGGAGCUCUGGAGGAGCUUCCAGGAGACACACACAACAACUAACAAAUAACGCUUAAAAGUGGCUCGCCUCACCUGGCCAGCAUCCUUUGGUGUCCUCGUUUCUCUCC------------ ((((((.((((((....))))))(((((((.((.................((((....))))(((.(((......))).)))......)))))).)))))))))....------------ ( -32.30) >consensus _______CUGGAGGAGCUUCCAGCAGACACACACAAC_______AAAUAACGCUUAAAAGUUGCUCGCCUCACCUGGCCAGCAUCCUUUGGUGUCCUCGCUUCCCUCCUCACCACCCCU_ .......((((((....))))))..(((((.((...............(((........)))(((.(((......))).)))......)))))))......................... (-22.06 = -22.46 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:43 2006