Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,435,686 – 11,435,806 |
Length | 120 |
Max. P | 0.999564 |
Location | 11,435,686 – 11,435,806 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.83 |
Mean single sequence MFE | -31.72 |
Consensus MFE | -31.06 |
Energy contribution | -31.66 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.55 |
Structure conservation index | 0.98 |
SVM decision value | 3.73 |
SVM RNA-class probability | 0.999564 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11435686 120 + 27905053 CUCAAGUCCCGGACAAAAUAUGUUUUUAAUAUGCAAAAACUUUUAGCCAAAUGGCUUUUAACUGUCAUUAGGCAACUGUUGCCCGAGCGGAUCCAAAGCCAGAAAAUGGCCAAUGAAAUU .(((.(((((((.(((.....((((((.......)))))).....(((.((((((........)))))).))).....))).)))...)))).....((((.....))))...))).... ( -27.60) >DroSec_CAF1 175795 120 + 1 CUCAAGUCCCGGGCAAAAUAUGUUUUUAAUAUGCAAAAACUUUUAGCCAAAUGGCUUUUAACUGUCAUUAGGCAACUGUUGCCCGAGCGGAUCCAAAGCCAGAAAAUGGCCAAUGAAAUU .(((.(((((((((((.....((((((.......)))))).....(((.((((((........)))))).))).....)))))))...)))).....((((.....))))...))).... ( -34.70) >DroSim_CAF1 169992 120 + 1 CUCAAGUCCCGGACAAAAUAUGUUUUUAAUAUGCAAAAACUUUUAGCCAAAUGGCUUUUAACUGUCAUUAGGCAACUGUUGCCCGAGCGGAUCCAAAGCCAGAAAAUGGCCAAUGAAAUU .(((.(((((((.(((.....((((((.......)))))).....(((.((((((........)))))).))).....))).)))...)))).....((((.....))))...))).... ( -27.60) >DroEre_CAF1 165377 120 + 1 CUCAAGUCCCGGGCAAAAUAUGUUUUUAAUAUGCAAAAACUUUUAGCCAAAUGGCUUUUAACUGUCAUUAGGCAACUGUUGCCCGAGCGGAUCCGAAGCCAGAAAAUGGCCAAUGAAAUU .((..(((((((((((.....((((((.......)))))).....(((.((((((........)))))).))).....)))))))...))))..)).((((.....)))).......... ( -34.80) >DroYak_CAF1 168181 120 + 1 CUCAAGUCCCGGGCAAAAUAUGUUUUUAAUAUGCAAAAACUUUUAGCCAAAUGGCUUUUAACUGUCAUUAGGCAACUGUUGCCCGAGCGGAGCCAAAGCCAGAAAAUGGCCAAUGAAAUU .(((..((((((((((.....((((((.......)))))).....(((.((((((........)))))).))).....)))))))...)))......((((.....))))...))).... ( -33.90) >consensus CUCAAGUCCCGGGCAAAAUAUGUUUUUAAUAUGCAAAAACUUUUAGCCAAAUGGCUUUUAACUGUCAUUAGGCAACUGUUGCCCGAGCGGAUCCAAAGCCAGAAAAUGGCCAAUGAAAUU .(((.(((((((((((.....((((((.......)))))).....(((.((((((........)))))).))).....)))))))...)))).....((((.....))))...))).... (-31.06 = -31.66 + 0.60)
Location | 11,435,686 – 11,435,806 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.83 |
Mean single sequence MFE | -32.50 |
Consensus MFE | -31.32 |
Energy contribution | -31.28 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.92 |
Structure conservation index | 0.96 |
SVM decision value | 2.30 |
SVM RNA-class probability | 0.991931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11435686 120 - 27905053 AAUUUCAUUGGCCAUUUUCUGGCUUUGGAUCCGCUCGGGCAACAGUUGCCUAAUGACAGUUAAAAGCCAUUUGGCUAAAAGUUUUUGCAUAUUAAAAACAUAUUUUGUCCGGGACUUGAG ...((((..(((((.....))))).))))....(((((((((.....(((.((((.(........).)))).))).....(((((((.....))))))).....)))))))))....... ( -31.00) >DroSec_CAF1 175795 120 - 1 AAUUUCAUUGGCCAUUUUCUGGCUUUGGAUCCGCUCGGGCAACAGUUGCCUAAUGACAGUUAAAAGCCAUUUGGCUAAAAGUUUUUGCAUAUUAAAAACAUAUUUUGCCCGGGACUUGAG ...((((..(((((.....))))).))))....(((((((((.....(((.((((.(........).)))).))).....(((((((.....))))))).....)))))))))....... ( -33.70) >DroSim_CAF1 169992 120 - 1 AAUUUCAUUGGCCAUUUUCUGGCUUUGGAUCCGCUCGGGCAACAGUUGCCUAAUGACAGUUAAAAGCCAUUUGGCUAAAAGUUUUUGCAUAUUAAAAACAUAUUUUGUCCGGGACUUGAG ...((((..(((((.....))))).))))....(((((((((.....(((.((((.(........).)))).))).....(((((((.....))))))).....)))))))))....... ( -31.00) >DroEre_CAF1 165377 120 - 1 AAUUUCAUUGGCCAUUUUCUGGCUUCGGAUCCGCUCGGGCAACAGUUGCCUAAUGACAGUUAAAAGCCAUUUGGCUAAAAGUUUUUGCAUAUUAAAAACAUAUUUUGCCCGGGACUUGAG ....((...(((((.....)))))...))....(((((((((.....(((.((((.(........).)))).))).....(((((((.....))))))).....)))))))))....... ( -33.00) >DroYak_CAF1 168181 120 - 1 AAUUUCAUUGGCCAUUUUCUGGCUUUGGCUCCGCUCGGGCAACAGUUGCCUAAUGACAGUUAAAAGCCAUUUGGCUAAAAGUUUUUGCAUAUUAAAAACAUAUUUUGCCCGGGACUUGAG ....(((..(((((.....))))).)))(((..(((((((((.....(((.((((.(........).)))).))).....(((((((.....))))))).....)))))))))....))) ( -33.80) >consensus AAUUUCAUUGGCCAUUUUCUGGCUUUGGAUCCGCUCGGGCAACAGUUGCCUAAUGACAGUUAAAAGCCAUUUGGCUAAAAGUUUUUGCAUAUUAAAAACAUAUUUUGCCCGGGACUUGAG ....((...(((((.....)))))...))....(((((((((.....(((.((((.(........).)))).))).....(((((((.....))))))).....)))))))))....... (-31.32 = -31.28 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:41 2006