Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,623,634 – 1,623,748 |
Length | 114 |
Max. P | 0.539902 |
Location | 1,623,634 – 1,623,748 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 84.21 |
Mean single sequence MFE | -37.37 |
Consensus MFE | -24.54 |
Energy contribution | -26.35 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.21 |
Mean z-score | -2.43 |
Structure conservation index | 0.66 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1623634 114 + 27905053 GCAGCGAAAGCGGAUCGCAGCAAAAGCAAAAUAUUGUAGAAACUACAGUGGAUCCUGCUCCGGAA-----ACCGAGAGUUUCAUCGAGAAGAUUGCGAAGCGAACGGCAGCUGCUGGCA (((((....((.(.((((.((((........((((((((...))))))))(((...(((((((..-----.))).))))...))).......))))...)))).).)).)))))..... ( -37.30) >DroSec_CAF1 2953 114 + 1 GCAGCGAAAGCGGAUCGCAGCAAAAGCAAAAUAUUGUAGAGACUACAGUGGAUCCUGCUCCAGAA-----ACCGAGAGUUUCAUCGAGAAGAUUGCGAAGCGAACGGCAGCUGCUGGCA (((((....((.(.((((.((((.((((...((((((((...)))))))).....))))...(((-----((.....)))))..........))))...)))).).)).)))))..... ( -35.30) >DroSim_CAF1 2931 114 + 1 GCAGCGAAAGCGGAUCGCAGCAAAAGCAAAAUAUUGUAGAGACUACAGUGGAUCCUGCUCCGGAA-----ACCGAGAGUUUCAUCGAGAAGAUUGCGAAGCGAACGGCAGCUGCUGGCA (((((....((.(.((((.((((........((((((((...))))))))(((...(((((((..-----.))).))))...))).......))))...)))).).)).)))))..... ( -37.30) >DroEre_CAF1 3119 114 + 1 GCAGCGAAAGUGGAUCCCAGCAAAAGCAAAAUUUUGUAGAAACUACAGUGGAUCCUGCUCCGGAA-----ACCGAGAGUUUCAUCGAGAAGAUUGCGAAGCGAACAGCAGCUGCUGGCA (((((......(((((((.((....)).......(((((...)))))).))))))((((((((..-----.))).))((((((((.....)))...))))).....))))))))..... ( -33.40) >DroYak_CAF1 2962 114 + 1 GCAGCGAUAGCGGUUCGCAGCAAAAGCAAAAUAUUGUAGAAACUACAGUGGAUCCUGCUCCGGAA-----ACUGAGAGUUUUAUCGAGAAGAUUGCGAAGCGAACAGCAGCUGCUGGCA (((((....((.((((((.((((........((((((((...))))))))(((...((((((...-----.).).))))...))).......))))...)))))).)).)))))..... ( -38.10) >DroMoj_CAF1 3093 102 + 1 GUAGCGAUUG-------CAGC--CAGCAGAAUGUGGUGGACACCAC------GCCAG--UCAGCAGCGUGGGCGAGAGCUUUAUUGAGAAGAUUGCCAAACGUACGGCUGCUGCUGGCA ...((....)-------).((--((((((...(((((....)))))------.....--.((((.((((.(((((...((((.....)))).)))))..))))...)))))))))))). ( -42.80) >consensus GCAGCGAAAGCGGAUCGCAGCAAAAGCAAAAUAUUGUAGAAACUACAGUGGAUCCUGCUCCGGAA_____ACCGAGAGUUUCAUCGAGAAGAUUGCGAAGCGAACGGCAGCUGCUGGCA ((.((....)).....(((((....((((..((((((((...))))))))(((...(((((((........))).))))...))).......))))...((.....)).)))))..)). (-24.54 = -26.35 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:59 2006