Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,426,750 – 11,426,949 |
Length | 199 |
Max. P | 0.997510 |
Location | 11,426,750 – 11,426,869 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.82 |
Mean single sequence MFE | -27.22 |
Consensus MFE | -26.92 |
Energy contribution | -26.60 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.06 |
Mean z-score | -1.92 |
Structure conservation index | 0.99 |
SVM decision value | 2.87 |
SVM RNA-class probability | 0.997510 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11426750 119 + 27905053 AGCAAAUAUUAAAUACAUUAAAACUGACAUGCGAGGUCGAGUCAAAUGAGUAAACAAAAUUCAAUUCGAGUUGUACUCAGAUUCA-AGCCACUUAAAUGGUCUUUGAUGUGGUAUUCCGC .((...........((((((((...(((.......)))(((((...((((((.....(((((.....))))).))))))))))).-.((((......)))).))))))))((....)))) ( -24.70) >DroSec_CAF1 174297 119 + 1 AGCAAAUAUUAAAUACAUUAAAACUGACAUGCGAGGUCGAGUCAAAUGAGUAAACAAAACUCUAUUCGAGUUGUACUCAGAUUCA-AGCCACUUAAAUGGACUUUGAUGUGGUAUUCCGC .((.......................((((.((((((((((((...((((((.....(((((.....))))).))))))))))).-.....(......))))))))))))((....)))) ( -27.40) >DroSim_CAF1 168515 119 + 1 AGCAAAUAUUAAAUACAUUAAAACUGACAUGCGAGGUCGAGUCAAAUGAGUAAACAAAACUCAAUUCGAGUUGUACUCAGAUUCA-AGCCACUUAAAUGGACUUUGAUGUGGUAUUCCGC .((.......................((((.((((((((((((...((((((.....(((((.....))))).))))))))))).-.....(......))))))))))))((....)))) ( -27.50) >DroEre_CAF1 163878 120 + 1 AGCAAAUAUUAAAUACAUUAAAACUGACAUGCGAGGUCGAGUCAAAUGAGUAAACAAAACUCAAUGCGAGUUGUACUCAGAUUCAAAGCCACUUAAAUGGACUUUGAUGUGGUAUUCCGC .((.......................((((.((((((((((((...((((((.....(((((.....))))).))))))))))).......(......))))))))))))((....)))) ( -27.50) >DroYak_CAF1 166612 119 + 1 AGCAAAUAUUAAAUACAUUAAAACUGACAUGCGAGGUCGAGUCAAAUGAGUAAACAAAACUCAAUGCGAGUUGUACUCAGAUUCA-AGCCACUUAAAUGGACUUUGAUGUGGCAUUCCGC ..............................(((..((.(((((...((((((.....(((((.....))))).))))))))))).-.((((((((((.....))))).)))))))..))) ( -29.00) >consensus AGCAAAUAUUAAAUACAUUAAAACUGACAUGCGAGGUCGAGUCAAAUGAGUAAACAAAACUCAAUUCGAGUUGUACUCAGAUUCA_AGCCACUUAAAUGGACUUUGAUGUGGUAUUCCGC ..............................(((..((.(((((...((((((.....(((((.....))))).)))))))))))...((((((((((.....))))).)))))))..))) (-26.92 = -26.60 + -0.32)
Location | 11,426,790 – 11,426,909 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.15 |
Mean single sequence MFE | -29.38 |
Consensus MFE | -27.02 |
Energy contribution | -27.06 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.47 |
Structure conservation index | 0.92 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899921 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11426790 119 + 27905053 GUCAAAUGAGUAAACAAAAUUCAAUUCGAGUUGUACUCAGAUUCA-AGCCACUUAAAUGGUCUUUGAUGUGGUAUUCCGCUAACUUUCAGUCUGAGGAUUACCUAAGGACCCCAGGCCAU (((...((((((.....(((((.....))))).))))))......-............((((((((....((((.(((.(..((.....))..).))).))))))))))))...)))... ( -29.00) >DroSec_CAF1 174337 119 + 1 GUCAAAUGAGUAAACAAAACUCUAUUCGAGUUGUACUCAGAUUCA-AGCCACUUAAAUGGACUUUGAUGUGGUAUUCCGCUAACUUUCAGUCUGAGGAUUACCUAAGGACCCCAGGCCAU ((((((((((((.....(((((.....))))).))))))......-..(((......)))..))))))..((((.(((.(..((.....))..).))).))))...((.((...)))).. ( -28.40) >DroSim_CAF1 168555 119 + 1 GUCAAAUGAGUAAACAAAACUCAAUUCGAGUUGUACUCAGAUUCA-AGCCACUUAAAUGGACUUUGAUGUGGUAUUCCGCUAACUUUCAGUCUGAGGAUUACCUAAGGACCCCAGGCCAU ((((((((((((.....(((((.....))))).))))))......-..(((......)))..))))))..((((.(((.(..((.....))..).))).))))...((.((...)))).. ( -28.50) >DroEre_CAF1 163918 120 + 1 GUCAAAUGAGUAAACAAAACUCAAUGCGAGUUGUACUCAGAUUCAAAGCCACUUAAAUGGACUUUGAUGUGGUAUUCCGCUAACUUUCAGUCUGAGGAUUACCUAAGGACCCCAGGCCAU ......((((((.....(((((.....))))).))))))...(((((((((......))).))))))...((((.(((.(..((.....))..).))).))))...((.((...)))).. ( -32.00) >DroYak_CAF1 166652 119 + 1 GUCAAAUGAGUAAACAAAACUCAAUGCGAGUUGUACUCAGAUUCA-AGCCACUUAAAUGGACUUUGAUGUGGCAUUCCGCCAACUUUCAGUCUGAGGAUUACCCAAGGACCCCAGGCCAU (((...((.((((.(..(((((.....)))))...(((((((..(-(((((......))).)))(((..((((.....))))....))))))))))).)))).))..))).......... ( -29.00) >consensus GUCAAAUGAGUAAACAAAACUCAAUUCGAGUUGUACUCAGAUUCA_AGCCACUUAAAUGGACUUUGAUGUGGUAUUCCGCUAACUUUCAGUCUGAGGAUUACCUAAGGACCCCAGGCCAU ......((((((.....(((((.....))))).))))))...(((.(((((......))).)).)))...((((.(((.(..((.....))..).))).))))...((.((...)))).. (-27.02 = -27.06 + 0.04)
Location | 11,426,830 – 11,426,949 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.76 |
Mean single sequence MFE | -29.26 |
Consensus MFE | -27.46 |
Energy contribution | -27.14 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.11 |
Mean z-score | -1.32 |
Structure conservation index | 0.94 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11426830 119 - 27905053 AUCAUUACACUACCCACCCAUUUUAAUUGUUAAGCUCCAGAUGGCCUGGGGUCCUUAGGUAAUCCUCAGACUGAAAGUUAGCGGAAUACCACAUCAAAGACCAUUUAAGUGGCU-UGAAU .................((((((.(((.(((..(((((((.....))))))).....((((.(((.(.(((.....))).).))).))))........))).))).))))))..-..... ( -28.10) >DroSec_CAF1 174377 111 - 1 --------ACUACCCACCCAUUUUAAUUGUUAAGCUACAGAUGGCCUGGGGUCCUUAGGUAAUCCUCAGACUGAAAGUUAGCGGAAUACCACAUCAAAGUCCAUUUAAGUGGCU-UGAAU --------.....................(((((((((((((((.((..(((.....((((.(((.(.(((.....))).).))).))))..)))..)).))))))..))))))-))).. ( -29.10) >DroSim_CAF1 168595 111 - 1 --------ACUACCCACCCAUUUUAAUUGUUAAGCUUCAGAUGGCCUGGGGUCCUUAGGUAAUCCUCAGACUGAAAGUUAGCGGAAUACCACAUCAAAGUCCAUUUAAGUGGCU-UGAAU --------....((((.((((((.....(.....)...))))))..)))).......((((.(((.(.(((.....))).).))).))))...((((.(.((((....))))))-))).. ( -25.80) >DroEre_CAF1 163958 112 - 1 --------GCUUCCCACCCGUUUUAAUUGUUAAGCCCCAGAUGGCCUGGGGUCCUUAGGUAAUCCUCAGACUGAAAGUUAGCGGAAUACCACAUCAAAGUCCAUUUAAGUGGCUUUGAAU --------.........................(((((((.....))))))).....((((.(((.(.(((.....))).).))).))))...((((((.((((....)))))))))).. ( -34.00) >DroYak_CAF1 166692 111 - 1 --------GCUUCCCACCCGUUUUAAUUGUUAAGCCCCAGAUGGCCUGGGGUCCUUGGGUAAUCCUCAGACUGAAAGUUGGCGGAAUGCCACAUCAAAGUCCAUUUAAGUGGCU-UGAAU --------.........................(((((((.....)))))))...((((((.(((.(.(((.....))).).))).)))).))((((.(.((((....))))))-))).. ( -29.30) >consensus ________ACUACCCACCCAUUUUAAUUGUUAAGCUCCAGAUGGCCUGGGGUCCUUAGGUAAUCCUCAGACUGAAAGUUAGCGGAAUACCACAUCAAAGUCCAUUUAAGUGGCU_UGAAU .................................(((((((.....))))))).....((((.(((.(.(((.....))).).))).))))...(((.((.((((....)))))).))).. (-27.46 = -27.14 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:35 2006