Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,425,474 – 11,425,589 |
Length | 115 |
Max. P | 0.938273 |
Location | 11,425,474 – 11,425,589 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -24.48 |
Consensus MFE | -20.62 |
Energy contribution | -20.76 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.03 |
Mean z-score | -1.75 |
Structure conservation index | 0.84 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11425474 115 + 27905053 CGCUUUUUGCAUU-----UCGGCAGUCUGGCUGUUAACUUUUCAUUUGGGAAAAUGGACCACAAAAUUUGUACUACAAGUUGUCCCAACUUGAGCAUAUUUUGUUUUAUUUCCUUCUUAC .(((..((((...-----...))))...)))................((((((.((((..(((((((.(((....(((((((...))))))).))).)))))))))))))))))...... ( -24.30) >DroSec_CAF1 173019 120 + 1 CGCUUUUCGCAUUUCGUUUCGGCCGUCUGGCUGUUAACUUUUCAUUUGGGAAAAUGGACCACAAAAUUUGUACUACAAGUUGUCCCAACUUGAGCAUAUUUUGUUUUAUUUCCUUCUUAC .((.....)).....(((.(((((....)))))..))).........((((((.((((..(((((((.(((....(((((((...))))))).))).)))))))))))))))))...... ( -27.00) >DroSim_CAF1 167232 120 + 1 CGCUUUCCGCAUUUCGUUUCGGCCGUCUGGCUGUUAACUUUUCAUUUGGAAAAAUGGACCACAAAAUUUGUACUACAAGUUGUCCCAACUUGAGCAUAUUUUGUUUUAUUUCCUUCUUAC .((.....)).....(((.(((((....)))))..)))..(((((((....)))))))..(((((((.(((....(((((((...))))))).))).)))))))................ ( -26.50) >DroEre_CAF1 162621 120 + 1 CGCAUUUUGCUUUUCGCUUCGGCAGUCUGGCUGUUAACUUUUCAUUUCGUAAAAUGGACCACAAAAUUUGUACUACAAGUUGUCCCAACUUGAGCAUGUUUUGUUUUAUUUCUUUCGUAC ..((((((((.....((....))((.....))................))))))))....(((((((.(((....(((((((...))))))).))).)))))))................ ( -23.40) >DroYak_CAF1 165272 120 + 1 CGCAUUUCGCUUUUCGCUUCGGCAGUCUGGCUGUUAACUUUUCAUUUCGUAAAAUGGACCACAAAAUUUGUACUACAAGUUGUCCCAACUUGAGCAUAUUUUGUUUUAUUUCUUUCUUAC ........(((...(((....)).)...))).........(((((((....)))))))..(((((((.(((....(((((((...))))))).))).)))))))................ ( -21.20) >consensus CGCUUUUCGCAUUUCGCUUCGGCAGUCUGGCUGUUAACUUUUCAUUUGGGAAAAUGGACCACAAAAUUUGUACUACAAGUUGUCCCAACUUGAGCAUAUUUUGUUUUAUUUCCUUCUUAC .((.....)).........((((......)))).......(((((((....)))))))..(((((((.(((....(((((((...))))))).))).)))))))................ (-20.62 = -20.76 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:32 2006