Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,423,797 – 11,423,947 |
Length | 150 |
Max. P | 0.973006 |
Location | 11,423,797 – 11,423,916 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.69 |
Mean single sequence MFE | -35.84 |
Consensus MFE | -27.99 |
Energy contribution | -29.02 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.03 |
Mean z-score | -2.31 |
Structure conservation index | 0.78 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11423797 119 - 27905053 AUUCUGGAA-ACUGAAGACUGUAAACCGAAAGGCUUGCCAGCGCCUUGUGCAAACACUAGCGCAAAAAGGCACACAGCGUAUACGCAUUAUCCUUGCAGCAGGUUUCUUGUUGCCUCAAC .(((.(...-.).)))(.((((((.((....)).))).))))(((((((((........)))))...)))).....(((....))).........((((((((...))))))))...... ( -35.80) >DroSec_CAF1 171336 119 - 1 AUUCUGGAA-GCUGAAGACUGUAAACCGAAAGGCUUGCCAGCGCCUUGUGCAAACACUAGCGCAAAAAGGCACACAGCGUAUACGCAUUAUCCUUGCAGCAGGUUCCUUGUUGCUUCAAC .....(((.-((((......((((.((....)).))))))))(((((((((........)))))...)))).....(((....)))....)))..((((((((...))))))))...... ( -38.60) >DroSim_CAF1 165196 97 - 1 AUUCUGGAA-ACUGAAGACUGUAAACCGAAAGGCUUGCCAGCGCCUUGUGCAAACACUAGCGCAAAAAGGCACACAGCGUAUACGCAUUAUCCUUG----------------------AC .(((.(...-.).)))(.((((((.((....)).))).))))(((((((((........)))))...)))).....(((....)))..........----------------------.. ( -27.30) >DroEre_CAF1 161037 119 - 1 GUCCUGGAA-ACUGAAGACUGUAAACCGAAAGGCUUGCCUGCGCCUUGUGCAAACACUAGCGCAAAAAGGCACACAGCGUAUACGCAUUAUCCUUGUUGCAGGUUCCUUGUUGGUUCAAC (((..(...-.)....)))....((((((((((...(((((((((((((((........)))))...)))).....(((....)))............)))))).)))).)))))).... ( -39.40) >DroYak_CAF1 163617 120 - 1 GUCCUGGAAAAGUGAAGACUGUAAAGCGAAAGGCUUGCCAGCGCCUUGUGCAAACACUAGCGCAAAAAGGCACACAGCGUAUACGCAUUAUCCUUGCAGCAGGUUCCUUGUUGCUUCAAC .....(((...(((..(.(((..((((.....))))..))))(((((((((........)))))...)))).))).(((....)))....)))..((((((((...))))))))...... ( -38.10) >consensus AUUCUGGAA_ACUGAAGACUGUAAACCGAAAGGCUUGCCAGCGCCUUGUGCAAACACUAGCGCAAAAAGGCACACAGCGUAUACGCAUUAUCCUUGCAGCAGGUUCCUUGUUGCUUCAAC .....(((............((((.((....)).))))..(.(((((((((........)))))...)))).)...(((....)))....)))..((((((((...))))))))...... (-27.99 = -29.02 + 1.03)
Location | 11,423,837 – 11,423,947 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.68 |
Mean single sequence MFE | -34.74 |
Consensus MFE | -27.50 |
Energy contribution | -28.06 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -2.34 |
Structure conservation index | 0.79 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.973006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11423837 110 - 27905053 UC---------GUCGCAGGACAAACAGGACUCGCAACUGGAUUCUGGAA-ACUGAAGACUGUAAACCGAAAGGCUUGCCAGCGCCUUGUGCAAACACUAGCGCAAAAAGGCACACAGCGU ..---------(((....)))..........(((..(((..(((.(...-.).)))....((((.((....)).))))))).(((((((((........)))))...)))).....))). ( -30.70) >DroSec_CAF1 171376 110 - 1 UC---------GUCGCAGGACAAACAGGACUCGAAACAGGAUUCUGGAA-GCUGAAGACUGUAAACCGAAAGGCUUGCCAGCGCCUUGUGCAAACACUAGCGCAAAAAGGCACACAGCGU ..---------(((....)))...(((((..(......)..)))))...-((((..(.((((((.((....)).))).))))(((((((((........)))))...))))...)))).. ( -35.60) >DroSim_CAF1 165214 110 - 1 UC---------GUCGCAGGACAAACAGGACUCGAAACAGGAUUCUGGAA-ACUGAAGACUGUAAACCGAAAGGCUUGCCAGCGCCUUGUGCAAACACUAGCGCAAAAAGGCACACAGCGU ..---------..(((.((.(((............((((..(((.(...-.).)))..))))...((....)).))))).(.(((((((((........)))))...)))).)...))). ( -34.10) >DroEre_CAF1 161077 113 - 1 UCGCAGGACACGUCGCAGGACAAACAGGAAUCGA------GUCCUGGAA-ACUGAAGACUGUAAACCGAAAGGCUUGCCUGCGCCUUGUGCAAACACUAGCGCAAAAAGGCACACAGCGU ..((((((((.(((.(((......(((((.....------.)))))...-.)))..))))))...((....))....)))))(((((((((........)))))...))))......... ( -39.10) >DroYak_CAF1 163657 105 - 1 UC---------GUCGCAGGACAAACAGGAUUCGA------GUCCUGGAAAAGUGAAGACUGUAAAGCGAAAGGCUUGCCAGCGCCUUGUGCAAACACUAGCGCAAAAAGGCACACAGCGU ..---------..(((........((((((....------)))))).....(((..(.(((..((((.....))))..))))(((((((((........)))))...)))).))).))). ( -34.20) >consensus UC_________GUCGCAGGACAAACAGGACUCGAAAC_GGAUUCUGGAA_ACUGAAGACUGUAAACCGAAAGGCUUGCCAGCGCCUUGUGCAAACACUAGCGCAAAAAGGCACACAGCGU ...........(((.(((......(((((..(......)..))))).....)))..))).((((.((....)).))))..(.(((((((((........)))))...)))).)....... (-27.50 = -28.06 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:25 2006