Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,422,593 – 11,422,751 |
Length | 158 |
Max. P | 0.816253 |
Location | 11,422,593 – 11,422,713 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -23.50 |
Consensus MFE | -21.98 |
Energy contribution | -22.38 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.08 |
Mean z-score | -1.17 |
Structure conservation index | 0.94 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11422593 120 - 27905053 AAACCGUGGAAAACUAUUACUCCAAGGAUGCUCAAAUCCAAACACACACAAAACGCAGACCGAGACUCCAAUUCGUAUAGCGCACACACACAGACACAAGCUCGCUUACGUGCUCGACGG ...(((((((..........)))..((((......)))).....................((((.........((((.((((..(..............)..))))))))..)))))))) ( -19.14) >DroSec_CAF1 170118 120 - 1 AAACCGUGGAAAACUAUUACUCCAAGGAUGCUCAAAUCCAAACACAUACAAAACGCACACCUAGACUCCAAUUCGUAUGGCGCACACACACAGAUACAAGCGCGCUUACGUGCUCGACGG ...((((.((...............((((......))))...............((((.....((.......))(((.(((((.(..............).)))))))))))))).)))) ( -26.14) >DroSim_CAF1 163979 120 - 1 AAACCGUGGAAAACUAUUACUCCAAGGAUGCUCAAAUCCAAACACAUACAAAACGCACACCGAGACUCCAAUUCGUAUAGCGCACACACACAGAUACAAGCGCGCUUACGUGCUCGACGG ...((((.((...............((((......))))...............((((...(((.......)))(((.(((((.(..............).)))))))))))))).)))) ( -26.74) >DroEre_CAF1 158175 120 - 1 AAACCGUGGAAAACUAUUACUCCAAGGAUGCUCAAAUCCAAACACAUACAAAACGCACACCGAGACCACCAUUCGUAUACCGCACAUACACAGAUAGAAGCGCGCUUACGUGCUCGGCGG ...((((.((...(((((.......((((......))))...............((....((((.......))))......)).........)))))..(((((....))))))).)))) ( -23.70) >DroYak_CAF1 162384 120 - 1 AAACCGUGGAAAACUAUUACUCCAAGGAUGCUCAAAUCCAAACACAUACAAAACGCACACCGAGACCCCCAUUCGUACACCGCACACACACAGAUACAAGCGCGCUUACGUGCUCGGCGG ...((((.((...............((((......))))...............((((...(((.......)))(((..((((................))).)..))))))))).)))) ( -21.79) >consensus AAACCGUGGAAAACUAUUACUCCAAGGAUGCUCAAAUCCAAACACAUACAAAACGCACACCGAGACUCCAAUUCGUAUAGCGCACACACACAGAUACAAGCGCGCUUACGUGCUCGACGG ...((((.((...............((((......))))...............((((.....((.......))(((.(((((.(..............).)))))))))))))).)))) (-21.98 = -22.38 + 0.40)
Location | 11,422,633 – 11,422,751 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.47 |
Mean single sequence MFE | -30.95 |
Consensus MFE | -26.68 |
Energy contribution | -27.44 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.04 |
Mean z-score | -1.43 |
Structure conservation index | 0.86 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.816253 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11422633 118 - 27905053 UGGAGUUGGGCG--CCGAAUUGGGGGAAGCUCGGAAUUAUAAACCGUGGAAAACUAUUACUCCAAGGAUGCUCAAAUCCAAACACACACAAAACGCAGACCGAGACUCCAAUUCGUAUAG .((.(.....).--))(((((((((....(((((............((((..........)))).((((......))))....................))))).)))))))))...... ( -31.10) >DroSec_CAF1 170158 120 - 1 UGGAGUUGGGCCCUCCGAAUUGGGGGAAGCUCGGAAUUAUAAACCGUGGAAAACUAUUACUCCAAGGAUGCUCAAAUCCAAACACAUACAAAACGCACACCUAGACUCCAAUUCGUAUGG ((((((((((((((((.....)))))..))))((............((((..........)))).((((......))))....................))..))))))).......... ( -30.00) >DroSim_CAF1 164019 119 - 1 UGGAGUUGGGCCC-CCGAAUUGGGGGAAGCUCGGAAUUAUAAACCGUGGAAAACUAUUACUCCAAGGAUGCUCAAAUCCAAACACAUACAAAACGCACACCGAGACUCCAAUUCGUAUAG ..(((((((.(((-((.....))))).(((((((............((((..........)))).((((......))))....................))))).)))))))))...... ( -35.00) >DroEre_CAF1 158215 118 - 1 UGGAGUUGGGGCC--CGAAUUGGGGGAAGCUCGGAAUUAUAAACCGUGGAAAACUAUUACUCCAAGGAUGCUCAAAUCCAAACACAUACAAAACGCACACCGAGACCACCAUUCGUAUAC ..((((.((((((--(......)))....(((((............((((..........)))).((((......))))....................))))).)).))))))...... ( -26.60) >DroYak_CAF1 162424 119 - 1 GGGAGUUGGGGCU-GCGAAUUGGGGGAAGCCCGGAAUUAUAAACCGUGGAAAACUAUUACUCCAAGGAUGCUCAAAUCCAAACACAUACAAAACGCACACCGAGACCCCCAUUCGUACAC (((.(((.((..(-(((..((((((....(((((.........))).))..........))))))((((......))))..............))))..))..))).))).......... ( -32.04) >consensus UGGAGUUGGGCCC_CCGAAUUGGGGGAAGCUCGGAAUUAUAAACCGUGGAAAACUAUUACUCCAAGGAUGCUCAAAUCCAAACACAUACAAAACGCACACCGAGACUCCAAUUCGUAUAG ...............((((((((((....(((((............((((..........)))).((((......))))....................))))).))))))))))..... (-26.68 = -27.44 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:21 2006