Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,420,571 – 11,420,683 |
Length | 112 |
Max. P | 0.977344 |
Location | 11,420,571 – 11,420,683 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.10 |
Mean single sequence MFE | -34.24 |
Consensus MFE | -29.04 |
Energy contribution | -28.88 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.95 |
Structure conservation index | 0.85 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977344 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11420571 112 - 27905053 AGCGACAAGGCUGCAAACCCAUACAAAGGAGUCGCCAGCAGGAUAAUGGUUGAAUCGCACGGAAUCUAGGCUAAAGCAAUAGAGCAA--------CCGUGGCAACUGGAGGCGACACCAA (((......)))...............((.((((((..(((....(((((((..((.....)).((((.((....))..)))).)))--------)))).....)))..)))))).)).. ( -32.60) >DroSec_CAF1 168028 112 - 1 AGCGACAAGGCUGCAAACCCAUACAAAGGAGUCGCCAGCAGGAUAAUGGUUGAAUCGCACGGAAUCUAGGCUAAAGCAAUAGAGCAA--------CCGUGGCAACUGGAGGCGACACCAA (((......)))...............((.((((((..(((....(((((((..((.....)).((((.((....))..)))).)))--------)))).....)))..)))))).)).. ( -32.60) >DroSim_CAF1 160905 112 - 1 AGCGACAAGGCUGCAAACCCAUACAAAGGAGUCGCCAGCAGGAUAAUGGUUGAAUCGCACGGAAUCUAGGCUAAAGCAAUAGAGCAA--------CCGUGGCAACUGGAGGCGACACCAA (((......)))...............((.((((((..(((....(((((((..((.....)).((((.((....))..)))).)))--------)))).....)))..)))))).)).. ( -32.60) >DroEre_CAF1 156104 120 - 1 AGCGACAAGGCUGCAAGCCCGCACAAAGGAGUCGCCGGCAGGAUAAUGGUUGAAUCGCAUGGAAUCUAGGCUAAAGCAAUAGAGCAAUAGAGCAUCCGUGGCAACUGGAGGCGACACCAA .(((....(((.....)))))).....((.((((((..((((((.........)))(((((((.((((.(((..(....)..)))..))))...))))).))..)))..)))))).)).. ( -39.40) >DroYak_CAF1 160259 111 - 1 AGCGACAAGGCUGCAAGGCUACACAAAGGAGUCGCCAGCAGGAUAAUGGUUGAAUCGCACGGAAUCUAGGCUAAAGCAAUAGAGCA---------CCGUGGCAACUGGAGGCGACACCAA ........((((....)))).......((.((((((..((((((.........)))((((((..((((.((....))..))))...---------)))).))..)))..)))))).)).. ( -34.00) >consensus AGCGACAAGGCUGCAAACCCAUACAAAGGAGUCGCCAGCAGGAUAAUGGUUGAAUCGCACGGAAUCUAGGCUAAAGCAAUAGAGCAA________CCGUGGCAACUGGAGGCGACACCAA (((......)))...............((.((((((..((((((.........)))((((((..((((.((....))..))))............)))).))..)))..)))))).)).. (-29.04 = -28.88 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:18 2006