Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,419,828 – 11,419,920 |
Length | 92 |
Max. P | 0.991574 |
Location | 11,419,828 – 11,419,920 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 93.12 |
Mean single sequence MFE | -30.60 |
Consensus MFE | -28.52 |
Energy contribution | -28.77 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.57 |
Structure conservation index | 0.93 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991574 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11419828 92 + 27905053 AAGCAACAUGGCUACCGCCAUGUGUGGGUUUAUGUGCGCCAAGUGCCUAUGUGUGCGUGUUUGUAUGGCAAGUGCACGAAAUAAAUGUUUAU ((((((((((((....)))))))....((((.(((((((....((((.....(((((....))))))))).)))))))))))...))))).. ( -30.30) >DroSec_CAF1 167391 92 + 1 AAGCAACAUGGCUGCCGCCAUGUGUGUGUUUAUGUGCGCCAAGUGCCUAUGUGUGCGUGUUUGUAUGGCAAGUGCACGAAAUAAAUGUUUAU ((((((((((((....)))))))...(((((.(((((((....((((.....(((((....))))))))).))))))))))))..))))).. ( -31.20) >DroSim_CAF1 160209 92 + 1 AAGCAACAUGGCUGCCGCCAUGUGUGUGUUUAUGUGCGCCAAGUGCCUAUGUGUGCGUGUUUGUAUGGCAAGUGCACGAAAUAAAUGUUUAU ((((((((((((....)))))))...(((((.(((((((....((((.....(((((....))))))))).))))))))))))..))))).. ( -31.20) >DroEre_CAF1 155410 84 + 1 AAGCAACAUGGCUGCCGCCAUG--------UGUGUGCGCCAAGUGCCAGUGUGUGCGUGUUUGUAUGGCAAGUGCACGAAAUAAAUGUUUAU ((((((((((((....))))))--------).(((((((....(((((.....((((....))))))))).))))))).......))))).. ( -29.70) >consensus AAGCAACAUGGCUGCCGCCAUGUGUGUGUUUAUGUGCGCCAAGUGCCUAUGUGUGCGUGUUUGUAUGGCAAGUGCACGAAAUAAAUGUUUAU ((((((((((((....))))))).........(((((((....((((.....(((((....))))))))).))))))).......))))).. (-28.52 = -28.77 + 0.25)
Location | 11,419,828 – 11,419,920 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 93.12 |
Mean single sequence MFE | -22.16 |
Consensus MFE | -20.99 |
Energy contribution | -21.23 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.30 |
Structure conservation index | 0.95 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986773 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11419828 92 - 27905053 AUAAACAUUUAUUUCGUGCACUUGCCAUACAAACACGCACACAUAGGCACUUGGCGCACAUAAACCCACACAUGGCGGUAGCCAUGUUGCUU ...............((((.((((((...................))))...)).))))..........(((((((....)))))))..... ( -21.81) >DroSec_CAF1 167391 92 - 1 AUAAACAUUUAUUUCGUGCACUUGCCAUACAAACACGCACACAUAGGCACUUGGCGCACAUAAACACACACAUGGCGGCAGCCAUGUUGCUU ...............((((.((((((...................))))...)).)))).......((.(((((((....)))))))))... ( -22.01) >DroSim_CAF1 160209 92 - 1 AUAAACAUUUAUUUCGUGCACUUGCCAUACAAACACGCACACAUAGGCACUUGGCGCACAUAAACACACACAUGGCGGCAGCCAUGUUGCUU ...............((((.((((((...................))))...)).)))).......((.(((((((....)))))))))... ( -22.01) >DroEre_CAF1 155410 84 - 1 AUAAACAUUUAUUUCGUGCACUUGCCAUACAAACACGCACACACUGGCACUUGGCGCACACA--------CAUGGCGGCAGCCAUGUUGCUU ...............((((.(((((((.................)))))...)).))))..(--------((((((....)))))))..... ( -22.83) >consensus AUAAACAUUUAUUUCGUGCACUUGCCAUACAAACACGCACACAUAGGCACUUGGCGCACAUAAACACACACAUGGCGGCAGCCAUGUUGCUU ...............((((.((((((...................))))...)).))))..........(((((((....)))))))..... (-20.99 = -21.23 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:17 2006