| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,587,305 – 1,587,418 |
| Length | 113 |
| Max. P | 0.837772 |
| Location | 1,587,305 – 1,587,418 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 78.55 |
| Mean single sequence MFE | -37.71 |
| Consensus MFE | -21.19 |
| Energy contribution | -24.13 |
| Covariance contribution | 2.94 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1587305 113 + 27905053 UGGCCCAGUAAAGCUGGCGCGGAUGGGGAACAGGCCCUGCC--CCUCCGAUUACCACUACUUACAUGUCCGAAUUUGUGGUACAUCAGAAAGCUCUCAGCCGACUGGGCCACCUC (((((((((...(((((.(((((.((((..(((...)))))--)))))(((((((((...................)))))).))).....)).).))))..))))))))).... ( -47.81) >DroGri_CAF1 6621 98 + 1 GGGCACACU-UAGUUGAAGAGUGUGU-------------CA--ACUC-GACAACGACUACUUACAUGUCCAAACUUGUGAUACAUCAGAAAGCUCUCAGCCGAUUGGGCCACCUC .(((.((.(-..(((((.((((.(((-------------(.--....-))))..((....(((((.((....)).)))))....)).....)))))))))..).)).)))..... ( -24.20) >DroSec_CAF1 6473 113 + 1 UGGCCCAGUAAAGCUGGAGAGGAUGGGGACCCGGCCCCGCC--ACUCCGAUUGCCACUACUUACAUGUCCGAAUUUGUGGUACAUCAGAAAGCUCUCAGCCGACUGGGCCACCUC (((((((((...(((((((.((.(((((......)))))))--..((.(((((((((...................)))))).))).))...))).))))..))))))))).... ( -48.21) >DroSim_CAF1 6463 113 + 1 UGGCCCCGUAAAGCUGGCGAGGAUGGGGACCCGGCCCCGCC--ACUUCGAUUGCCACUACUUACAUGUCCGAAUUUGUGGUACAUCAGAAAGCUCUCAGCCGACUGGGCCACCUC ((((((.((...(((((.((((.(((((......)))))))--..((((((((((((...................)))))).))).)))...)))))))..)).)))))).... ( -40.81) >DroEre_CAF1 6479 113 + 1 UGGCCAGGUAAAGCUGGCGAGGAAGGGAACUCGUCCUCGCC--UCUCCGACUGCCAUUACUUACAUGUCCGAAUUUGUGGUACAUCAGAAAGCUUUCAGCCGACUGGGCCACCUC (((((.(((((((((((((((((((....))..))))))))--..((.((.((((((...................))))))..)).)).))))))..))).....))))).... ( -39.71) >DroAna_CAF1 6336 108 + 1 U----UGGUAAAUGUACUCUGGAUAUAGCCCA---CCCGCCUCCAUCUGAUUGCCACUACUUACAUGUCCAAAUUUGUGGUACAUCAGAAAGCUCUCAGCAGACUGGGCCACCUC .----.(((...(((((....).))))(((((---..(.......((((((((((((...................)))))).))))))..((.....)).)..))))).))).. ( -25.51) >consensus UGGCCCAGUAAAGCUGGCGAGGAUGGGGACCCGGCCCCGCC__ACUCCGAUUGCCACUACUUACAUGUCCGAAUUUGUGGUACAUCAGAAAGCUCUCAGCCGACUGGGCCACCUC .((((((((...(((((.(((...(((........))).......((.(((((((((...................)))))).))).))...))))))))..))))))))..... (-21.19 = -24.13 + 2.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:58 2006