Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,419,637 – 11,419,754 |
Length | 117 |
Max. P | 0.996822 |
Location | 11,419,637 – 11,419,754 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.91 |
Mean single sequence MFE | -34.37 |
Consensus MFE | -30.34 |
Energy contribution | -30.74 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.13 |
Structure conservation index | 0.88 |
SVM decision value | 2.75 |
SVM RNA-class probability | 0.996822 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11419637 117 + 27905053 AAAUGGUUGUGGCGGCUGAUUUUUUAUUUCGGUUUUU--UUUGCUUUCUCUUCUU-UUUUGCCAUAAAUAAAAUCUUGCUGGCAAAGUGAAGGAGUGAAAAAGCGGGCGGCACAUCGUCU ..(((((.(((.((.(((.((((((((((((((....--...))).....(((..-(((((((((((........))).)))))))).)))))))))))))).))).)).)))))))).. ( -34.00) >DroSec_CAF1 167197 120 + 1 AAAUGGUUGUGGCGGCUGAUUUUUUAUUUCGGUCUUUUUUUAGCUUUCUUCUCUUUUUUUGCCAUAAAUAAAAUCUUGCUGGCAAAGUGAAGGAGUGAAAAAGCGGGCGGCACAUCGUCU ..((((((((.((((((((.........))))))........(((((.(((((((((((((((((((........))).)))))))..))))))).)).)))))..)).))).))))).. ( -34.10) >DroSim_CAF1 160015 120 + 1 AAAUGGUUGUGGCGGCUGAUUUUUUAUUUCGGUCUUUUUUUAGCUUUCUUCUCUUUUUUUGCCAUAAAUAAAAUCUUGCUGGCAAAGUGAAGGAGUGAAAAAGCGGGCGGCACAUCGUCU ..((((((((.((((((((.........))))))........(((((.(((((((((((((((((((........))).)))))))..))))))).)).)))))..)).))).))))).. ( -34.10) >DroEre_CAF1 155218 113 + 1 AAAUGGCUGUGGCGGCUGAUUUUUUAUUUCGGUUU-----UCGCUUUUGCUUCU--UUUUGCCAUAAAUAAAAUCUUGCCGGCAAAGUGAAGGAGUGAAAAAGCGGGCGGCACAUCGUCU ....(((((((.((.(((.(((((((((((.....-----..((....))(((.--(((((((.................))))))).)))))))))))))).))).)).))))..))). ( -34.83) >DroYak_CAF1 159358 113 + 1 AAAUGGCUGUGGCGGCUGAUUUUUUAUUUCGGUUU-----UCGCUUCUGCUUCU--UUUUGCCAUAAAUAAAAUCUUGCCGGCAAAGUGAAGGAGUGAAAAAGCGGGCGGCACAUCGUCU ....(((((((.((.(((.(((((((((((.....-----..((....))(((.--(((((((.................))))))).)))))))))))))).))).)).))))..))). ( -34.83) >consensus AAAUGGUUGUGGCGGCUGAUUUUUUAUUUCGGUUUUU__UUAGCUUUCUCUUCUU_UUUUGCCAUAAAUAAAAUCUUGCUGGCAAAGUGAAGGAGUGAAAAAGCGGGCGGCACAUCGUCU ..((((.((((.((.(((.((((((((((((((.........)))......((...(((((((((((........))).)))))))).)).))))))))))).))).)).)))))))).. (-30.34 = -30.74 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:15 2006