Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,419,315 – 11,419,433 |
Length | 118 |
Max. P | 0.599541 |
Location | 11,419,315 – 11,419,433 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.64 |
Mean single sequence MFE | -15.82 |
Consensus MFE | -14.88 |
Energy contribution | -15.08 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.19 |
Structure conservation index | 0.94 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11419315 118 - 27905053 ACGUAGAAAUUCCUAAUAAAUUUGAAAAUAAAAUUCCUUUUUGUUUGCACGCAUCAAC--AAAAGACAGCAAACAAUAUUUUAAAAAAUAUUGAGUCUACUGUAUAAAUUUGCGACCACC .((((((...............((.((((((((.....)))))))).)).......((--(..((((......((((((((....)))))))).))))..))).....))))))...... ( -16.20) >DroSec_CAF1 166874 118 - 1 ACGUAGAAAUUCCUAAUAAAUUUGAAAAUAAAAUUCCUUUUUGUUUGCACGCAUCAAC--AAAAGACAGCAAACAAUAUUUUAAAAAAUAUUGAGUCUACUGUAUAAAUUUGCGACCACC .((((((...............((.((((((((.....)))))))).)).......((--(..((((......((((((((....)))))))).))))..))).....))))))...... ( -16.20) >DroSim_CAF1 159694 118 - 1 ACGUAGAAAUUCCUAAUAAAUUUGAAAAUAAAAUUCCUUUUUGUUUGCACGCAUCAAC--AAAAGACAGCAAACAAUAUUUUAAAAAAUAUUGAGUCUACUGUAUAAAUUUGCGACCACC .((((((...............((.((((((((.....)))))))).)).......((--(..((((......((((((((....)))))))).))))..))).....))))))...... ( -16.20) >DroEre_CAF1 154853 117 - 1 ACGUAGAAAUUCCUAAUAAAUUUGAAAAUAA-AUUCCUUUUUGUUUGCACGCACCAAC--AAAAGACAGCAAACAAUAUUUUAAAAAAUAUUGACUCUACUGUAUAAAUUUGCGACCACC .((((((........................-.....((((((((((....))..)))--)))))((((....((((((((....))))))))......)))).....))))))...... ( -15.90) >DroYak_CAF1 159006 119 - 1 ACGUAGAAAUUCCUAAUAAAUUUGAAAAUAAAAUUCCUUUUUGUUUGCACGCACCAACACAAAAGACAGCAAACAAUAUUUUAA-AAAUAUUGACUCUACUGUAUAAAUUUGCGACCACC .((((((...............((.((((((((.....)))))))).))................((((....(((((((....-.)))))))......)))).....))))))...... ( -14.60) >consensus ACGUAGAAAUUCCUAAUAAAUUUGAAAAUAAAAUUCCUUUUUGUUUGCACGCAUCAAC__AAAAGACAGCAAACAAUAUUUUAAAAAAUAUUGAGUCUACUGUAUAAAUUUGCGACCACC .((((((...............((.((((((((.....)))))))).))................((((....((((((((....))))))))......)))).....))))))...... (-14.88 = -15.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:11 2006