Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,418,353 – 11,418,473 |
Length | 120 |
Max. P | 0.664588 |
Location | 11,418,353 – 11,418,473 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.50 |
Mean single sequence MFE | -34.42 |
Consensus MFE | -28.52 |
Energy contribution | -29.92 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 0.83 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11418353 120 + 27905053 GACGCGGCAACUGUCGACAUUUGUUAAAGUUUUCCCAAUUUUUGUUUGCUUUGGCUGCUUCUCCUUGGGACUGCAAUUCAGUUGUCACUUUGACAGCUCACGCAAAGGUUGAUGGAAGCA ......((..((((((((.(((((....((..((((((.....((..((....)).))......))))))..)).....(((((((.....)))))))...))))).))))))))..)). ( -35.50) >DroSec_CAF1 165950 120 + 1 GACACGGCAACUGUCGACAUUUGUUAAAGUUUUCCCAAUUUUUGUUUGCUCUGGCUGCUUCUCCUUGGGACUGCAAUUCAGUUGUCACUUUGACAGCUCACGCAAACGUUGAUGGCAGCA ......((..((((((((.(((((....((..((((((.....((..((....)).))......))))))..)).....(((((((.....)))))))...))))).))))))))..)). ( -34.90) >DroSim_CAF1 158757 120 + 1 GACACGGCAACUGUCGACAUUUGUUAAAGUUUUCCCAAUUUUUGUUUGCUCUGGCUGCUUCUCCUUGGGACUGCAAUUCAGUUGUCACUUUGACAGCUCACGCAAAGGUUGAUGGCAGCA ......((..((((((((.(((((....((..((((((.....((..((....)).))......))))))..)).....(((((((.....)))))))...))))).))))))))..)). ( -34.90) >DroEre_CAF1 153835 119 + 1 GACAGGGCAACUGUCGACAUUUGUUAAAGUUUUCCCAAUUUCUGUUUGCCUUGGCUGCCUCUCCGCGGCACUGCAAUUCAGUUGUCACUUUGACAGCUCACGCAAAGGUUGAUGGAAG-C ....(((.((((...(((....)))..))))..)))..((((((((.(((((.(((((......)))))..(((.....(((((((.....)))))))...)))))))).))))))))-. ( -37.00) >DroYak_CAF1 158004 120 + 1 GACAGGGCAACUGUCGACAUUUGUUAAAGUUUUCCCAAUUUCUGUUUGCCUUGGCUGCCUCUCCUCUGCACUGCAAUUCAGUUGUCACUUUGACAGCUCACGCAAAGGUUGAUGGACGCC .....(((..((((((((.(((((..................(((.(((...((........))...)))..)))....(((((((.....)))))))...))))).))))))))..))) ( -29.80) >consensus GACACGGCAACUGUCGACAUUUGUUAAAGUUUUCCCAAUUUUUGUUUGCUUUGGCUGCUUCUCCUUGGGACUGCAAUUCAGUUGUCACUUUGACAGCUCACGCAAAGGUUGAUGGAAGCA ......((..((((((((.(((((....((..((((((.....((..((....)).))......))))))..)).....(((((((.....)))))))...))))).))))))))..)). (-28.52 = -29.92 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:10 2006