Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,417,823 – 11,417,926 |
Length | 103 |
Max. P | 0.565750 |
Location | 11,417,823 – 11,417,926 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.87 |
Mean single sequence MFE | -29.12 |
Consensus MFE | -19.57 |
Energy contribution | -20.21 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.10 |
Mean z-score | -2.03 |
Structure conservation index | 0.67 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11417823 103 + 27905053 CCUUCCAUUAGCGUCAUUUUUGGUGCUGCAAGUUCCCGCUCCCAGCGUCUGAA-----------------UGUGGAAUUUGGCAAACACUUUGCUAAAAAACGUUUUUCUAAAAGCAAAA ..((((((((((..((....))..))))...((((.(((.....)))...)))-----------------)))))))((((((((.....))))))))....(((((....))))).... ( -24.80) >DroSec_CAF1 165445 103 + 1 CCUUCCAUUAGCGUAAUUUUUGGUGCUGGAAGCUCCCGUUCCCAGCGUCUGAG-----------------UGCGGAAUUUGGCAAACAAUUUGCUAAAAAACGUUUUUCUAAAAGCAAAA ..........((.........(..(((((.(((....))).)))))..).(((-----------------.(((...((((((((.....))))))))...)))..))).....)).... ( -25.70) >DroSim_CAF1 158252 103 + 1 CCUUCCAUUAGCGUCAUUUUUGGUGCUGGAAGCUCCCGUUCCCAGCGUCUGAG-----------------UGUGGAAUUUGGCAAACAAUUUGCUAAAAAACGUUUUUCUAAAAGCAAAA ..((((((..((.(((.....(..(((((.(((....))).)))))..)))))-----------------)))))))((((((((.....))))))))....(((((....))))).... ( -26.60) >DroEre_CAF1 153282 107 + 1 CCUUCCAUUAGCGUCAUUUUUGGUGCUGGGAGCUCCCGUUCCCAAGCUCUGAACGUCU-------------GUGGAAUUUGGCAAACAAUUUGCUAAAAAACGUUUUUCUAAAAGCAAAA ..((((((..((((.....(..(.(((((((((....)))))).))).)..)))))..-------------))))))((((((((.....))))))))....(((((....))))).... ( -34.60) >DroYak_CAF1 157443 120 + 1 CCUUCCAUUAGCGUCAUUUUUGGUGCUGGAAGCUCCCGUUGCCAACGUCUGAGCGUUUGAACGGAGUGAGUGUGGAAUUUGGCAAACAAUUUGCUAAAAAACGUUUUUCUAAAAGCAAAA ..((((((((((..((....))..))))...(((((((((.(.(((((....))))).))))))...))))))))))((((((((.....))))))))....(((((....))))).... ( -33.90) >consensus CCUUCCAUUAGCGUCAUUUUUGGUGCUGGAAGCUCCCGUUCCCAGCGUCUGAG_________________UGUGGAAUUUGGCAAACAAUUUGCUAAAAAACGUUUUUCUAAAAGCAAAA ..((((((..........((..(((((((.(((....))).)))))).)..))..................))))))((((((((.....))))))))....(((((....))))).... (-19.57 = -20.21 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:09 2006