Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,417,077 – 11,417,182 |
Length | 105 |
Max. P | 0.980190 |
Location | 11,417,077 – 11,417,182 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.12 |
Mean single sequence MFE | -35.42 |
Consensus MFE | -28.22 |
Energy contribution | -27.74 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.12 |
Mean z-score | -2.39 |
Structure conservation index | 0.80 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980190 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11417077 105 + 27905053 GAGGAUUAUUCCAGGCGGAAGGUGAAGCAUAUGCAAAGCAGCUGAGUGAAAAUGCAGUUGGAGCGGCACCCAGGGAAAUUGGGUGGCCAUGGGCUGAA-------AUGUGGC-------- ..(((....)))...(....)......(((((....((((((((.((....)).))))).....(((((((((.....)))))).)))....)))...-------)))))..-------- ( -31.20) >DroSec_CAF1 164723 105 + 1 GAGGAUUAUUCCAGGCGGAAGGUGAAGCAUAUGCAAAGCAGCUGAGUGAAAAUGCAGUUGGAGCGGCACCCAGGGAAAUUGGGUGGCCAUGGGCUGAA-------AUGUGGC-------- ..(((....)))...(....)......(((((....((((((((.((....)).))))).....(((((((((.....)))))).)))....)))...-------)))))..-------- ( -31.20) >DroSim_CAF1 157519 105 + 1 GAGGAUUAUUCCAGGCGGAAGGUGAAGCAUAUGCAAAGCAGCUGAGUGAAAAUGCAGUUGGAGCGCCACCCAGGGAAAUUGGGUGGCCAUGGGCUGAA-------AUGUGGC-------- ..(((....)))..((.(.......(((.((((.....((((((.((....)).))))))....(((((((((.....))))))))))))).)))...-------...).))-------- ( -34.92) >DroEre_CAF1 152471 119 + 1 GAGGAUUACUCCG-GCGGAAGGUGAAGCAUAUGCAAAGCAGCCGAGUGAAAAUGCAGUUGGAGCGGCGCCCAGGGAAACUGGGUGGCCAUGGGCUGAAUAUGGGCAUGUGGCAAUGGAUA (((.....)))((-.(....).))...(((((((..(.(((((..........((.......))(((((((((.....)))))).)))...)))))....)..))))))).......... ( -41.40) >DroYak_CAF1 156665 113 + 1 GAGGAUUAUUCCGGGCGGAAGGUGAAGCAUAUGCAAAGCAGCUGAGUGAAAAUGCAGUUGGAGCGGCACCCAGGGAAAUUGGGUGGCCAUGGGCUGAA-------AUGGGGCCAUGGGUA ..(((....)))..((..........((....))....((((((.((....)).))))))..))..(((((((.....))))))).((((((.((...-------...)).))))))... ( -38.40) >consensus GAGGAUUAUUCCAGGCGGAAGGUGAAGCAUAUGCAAAGCAGCUGAGUGAAAAUGCAGUUGGAGCGGCACCCAGGGAAAUUGGGUGGCCAUGGGCUGAA_______AUGUGGC________ ..(((....)))...(....).....((....))....(((((..(((.....((.......))(.(((((((.....))))))).)))).)))))........................ (-28.22 = -27.74 + -0.48)
Location | 11,417,077 – 11,417,182 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.12 |
Mean single sequence MFE | -24.44 |
Consensus MFE | -19.26 |
Energy contribution | -19.50 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.08 |
Structure conservation index | 0.79 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.934133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11417077 105 - 27905053 --------GCCACAU-------UUCAGCCCAUGGCCACCCAAUUUCCCUGGGUGCCGCUCCAACUGCAUUUUCACUCAGCUGCUUUGCAUAUGCUUCACCUUCCGCCUGGAAUAAUCCUC --------.......-------..((((....(((.(((((.......))))))))((.......))...........))))....((....))......((((....))))........ ( -21.30) >DroSec_CAF1 164723 105 - 1 --------GCCACAU-------UUCAGCCCAUGGCCACCCAAUUUCCCUGGGUGCCGCUCCAACUGCAUUUUCACUCAGCUGCUUUGCAUAUGCUUCACCUUCCGCCUGGAAUAAUCCUC --------.......-------..((((....(((.(((((.......))))))))((.......))...........))))....((....))......((((....))))........ ( -21.30) >DroSim_CAF1 157519 105 - 1 --------GCCACAU-------UUCAGCCCAUGGCCACCCAAUUUCCCUGGGUGGCGCUCCAACUGCAUUUUCACUCAGCUGCUUUGCAUAUGCUUCACCUUCCGCCUGGAAUAAUCCUC --------.......-------..((((.....((((((((.......))))))))((.......))...........))))....((....))......((((....))))........ ( -25.10) >DroEre_CAF1 152471 119 - 1 UAUCCAUUGCCACAUGCCCAUAUUCAGCCCAUGGCCACCCAGUUUCCCUGGGCGCCGCUCCAACUGCAUUUUCACUCGGCUGCUUUGCAUAUGCUUCACCUUCCGC-CGGAGUAAUCCUC ........((...((((....(..(((((...(((..(((((.....))))).)))((.......))..........)))))..).))))..))............-.(((....))).. ( -29.60) >DroYak_CAF1 156665 113 - 1 UACCCAUGGCCCCAU-------UUCAGCCCAUGGCCACCCAAUUUCCCUGGGUGCCGCUCCAACUGCAUUUUCACUCAGCUGCUUUGCAUAUGCUUCACCUUCCGCCCGGAAUAAUCCUC .......(((.....-------..((((....(((.(((((.......))))))))((.......))...........))))....((....))..........))).(((....))).. ( -24.90) >consensus ________GCCACAU_______UUCAGCCCAUGGCCACCCAAUUUCCCUGGGUGCCGCUCCAACUGCAUUUUCACUCAGCUGCUUUGCAUAUGCUUCACCUUCCGCCUGGAAUAAUCCUC ........................((((....(((.(((((.......))))))))((.......))...........))))....((....))......((((....))))........ (-19.26 = -19.50 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:08 2006