| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,415,450 – 11,415,565 |
| Length | 115 |
| Max. P | 0.622058 |
| Location | 11,415,450 – 11,415,565 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.33 |
| Mean single sequence MFE | -23.22 |
| Consensus MFE | -17.78 |
| Energy contribution | -18.62 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11415450 115 - 27905053 UUAUUGAGUCCUUUGUGGCUCUUGAUUAAGACCUCCCUCGAAGAACCCUUCACCUGCUCCUGCCAGAUGGCUUUCCCUAAAAUACCUUCACCUACUAUCGC-CACUAACAAAGGA----A ........(((((((((((((((....))))........((((....))))..........)))((.((((............................))-)))).))))))))----. ( -22.29) >DroSec_CAF1 163032 120 - 1 UUGUUGAGUCCUUUGUGGCUCUUGAUUAAGACCUCCCUCGAAGAACCCUUCACCUGCUCCUGCCAGAUGGCUUUCCCUAAAAUACCUUCACCUCCUAUCGCCCACUUACAAAGGUCCUCA ....((((.((((((((((....................((((....))))..........(((....)))............................))).....)))))))..)))) ( -22.60) >DroSim_CAF1 155818 120 - 1 GUAUUGAGUCCUUUGUGGCUCUUGAUUAAGACCUCCCUCGAAGAACCCUUCACCUGCUCCUGCCAGAUGGCUUUCCCUAAAAUACCUUCACCUCCUAUCGCCCACUAACAAAGGUCCUCA ....((((.((((((((((....................((((....))))..........(((....)))............................))).....)))))))..)))) ( -22.60) >DroEre_CAF1 150829 118 - 1 U--UUGAGUCCUUUGUGGCUCCUAAUAAAGACCUCCCUGGAAGAACCCCUCACCUGCCCCUGCCAGAUGGCAUUCCCUAGAAUACCUUCAGCUCCAAUCGCCCACUAGCAAAGGUCCUCA .--.((((.((((((((((..((.....)).......((((.((.....))....((...((((....)))).......(((....))).))))))...))).....)))))))..)))) ( -23.20) >DroYak_CAF1 154973 120 - 1 UUAUUGAGUCCUUUGUGGCUCAUAAUAAAGACCUCCCUGGAAGAACCCUUCACCUGCUCCUGCCAGAUGGCAUUCCCCAAAAUACCUUCACCGCCUAUCGCCCACUAACAAAGGACCUCU .....((((((((((((((.................(((((((....))))....((....)))))..(((.....................)))....))).....)))))))).))). ( -25.40) >consensus UUAUUGAGUCCUUUGUGGCUCUUGAUUAAGACCUCCCUCGAAGAACCCUUCACCUGCUCCUGCCAGAUGGCUUUCCCUAAAAUACCUUCACCUCCUAUCGCCCACUAACAAAGGUCCUCA .....(((.((((((((((....................((((....))))..........(((....)))............................))).....)))))))..))). (-17.78 = -18.62 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:53 2006