Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,412,276 – 11,412,385 |
Length | 109 |
Max. P | 0.999461 |
Location | 11,412,276 – 11,412,385 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.62 |
Mean single sequence MFE | -29.48 |
Consensus MFE | -25.04 |
Energy contribution | -25.44 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.98 |
Structure conservation index | 0.85 |
SVM decision value | 3.62 |
SVM RNA-class probability | 0.999461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11412276 109 + 27905053 UAAAAAACAACGUGCAAUAGACCAGGCGAGAGCUUAACCCAAGCCC------AAGAAGGACUCA-----UCCUUCUGCCAUGUACCCCAAAAUUUCACCCUCUGUUGCUCGCUGGUCAUC .......((.((.((((((((...((.((((((((.....))))..------.(((((((....-----)))))))................)))).)).)))))))).)).))...... ( -29.70) >DroSec_CAF1 159917 109 + 1 UAAAAAACAACGUUCAAUAGACCAGGCGAGAGCUUAACCCAAGCCC------AAGAAGGACUCA-----UCCUUCUGCCAUGUACCCCAAAAUUUCACCCUCUGUUGCUCGCUGGUCAUC ...................((((((.((((.((((.....))))..------.(((((((....-----)))))))...............................))))))))))... ( -27.50) >DroSim_CAF1 151380 109 + 1 UAAAAAACAGCGUGCAAUAGACCAGGCGAGAGCUUAACCCAAGCCC------AAGAAGGACUCA-----UCCUUCUGCCAUGUACCCCAAAAUUUCACCCUCUGAUGCUCGCUGGUCAUC .......(((((.(((.((((...((.((((((((.....))))..------.(((((((....-----)))))))................)))).)).)))).))).)))))...... ( -32.30) >DroEre_CAF1 147697 114 + 1 UAAAAAACAACGUGCAAUAGACCAGGCGAGAGCUUAACCCAAGCCC------AAGAAGGACUCAACUCGUCCUUCCGCCGAGUACCCCAAAAUUCCACCCCCAGUUGCUCGCUGGUCAUC ...................(((((((((.(.((((.....)))).)------..(((((((.......)))))))))))(((((.....................)))))..)))))... ( -30.90) >DroYak_CAF1 151684 115 + 1 UAAAAAACAACGUGCAAUAGACCAGCCGAGAGCUUAACCCAAGCCCAAGUCCAAGAAGGACUCA-----UCCUUCUGCCGGGUACCCCAAAAUUUCACCCUCAGUUGCUCGCCGGUCAUC ...................((((.((.(((((((...................(((((((....-----)))))))...((((.............))))..)))).))))).))))... ( -27.02) >consensus UAAAAAACAACGUGCAAUAGACCAGGCGAGAGCUUAACCCAAGCCC______AAGAAGGACUCA_____UCCUUCUGCCAUGUACCCCAAAAUUUCACCCUCUGUUGCUCGCUGGUCAUC ...................((((((.((((.((((.....)))).........(((((((.........)))))))...............................))))))))))... (-25.04 = -25.44 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:47 2006