Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,411,956 – 11,412,076 |
Length | 120 |
Max. P | 0.979959 |
Location | 11,411,956 – 11,412,076 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.50 |
Mean single sequence MFE | -36.02 |
Consensus MFE | -31.16 |
Energy contribution | -32.16 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.37 |
Structure conservation index | 0.87 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630618 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11411956 120 + 27905053 UCGAUGUCUUCAGUGGCGCGUAAAAACAAAGGACUGCGGUCCGAGGUCAACCCUCUUGGAAAAGGUAACCUCGCCGGAUUUACUUUGCCGCCAGGACAUCUUAAGGAUUUAACUUGCUUU ..((((((((..((((((.(((((..(...((((....))))(((((..(((...((....))))).)))))...)..)))))..)))))).)))))))).((((.......)))).... ( -38.10) >DroSec_CAF1 159597 120 + 1 UCGAUGUCUUCAGUGGCGCGUAAAAACAAAGGACUGCGGUCCGAGGUCAACCCUCUUGGAAAAGGUAACCUCACCGGAUUUACUUAGCCGCCAGGACAUCUUAAGGAUUUAACUUGCUUU ..((((((((..(((((..(((((..(...((((....))))(((((..(((...((....))))).)))))...)..)))))...))))).)))))))).((((.......)))).... ( -38.50) >DroSim_CAF1 151060 120 + 1 UCGAUGUCUUCAGUGGCGCGUAAAAACAAAGGACUGCGGUCCGAGGUCAACCCUCUUGGAAAAGGUAACCUCACCGGAUUUACUUUGCCGCCAGGACAUCUUAAGGAUUUAACUUGCUUU ..((((((((..((((((.(((((..(...((((....))))(((((..(((...((....))))).)))))...)..)))))..)))))).)))))))).((((.......)))).... ( -38.10) >DroEre_CAF1 147367 120 + 1 UCGAUGUCUUCAGUGGCGCGUAAAAACAAAGGACUGCGGUCCGAGGUCAACCCUCUUGGAAAAGGUAACCUCAGCGGAUUUACUUUGCCGGCAGGACAUCUUAAGGAUUUAACUUGCCUU ..((((((((...(((((.(((((..(...((((....))))(((((..(((...((....))))).)))))...)..)))))..)))))..))))))))..((((..........)))) ( -35.00) >DroYak_CAF1 151324 120 + 1 UCGCUGUCUUCAAUGGCGCGUAAAAACAAAGGACUGCGUUCGGAGGUCAACCCUCUUGGAAAAGGUAACCUCACCGGAUUUACUUUGCCGCCAGGACAUCUUAAGGAUUUAACGUGCCUU ..............((((((((((..(..((((....(((((((((.....)))))(((..(((((((((.....))..)))))))....))))))).))))..)..))).))))))).. ( -30.40) >consensus UCGAUGUCUUCAGUGGCGCGUAAAAACAAAGGACUGCGGUCCGAGGUCAACCCUCUUGGAAAAGGUAACCUCACCGGAUUUACUUUGCCGCCAGGACAUCUUAAGGAUUUAACUUGCUUU ..(((((((...(((((..(((((..(...((((....))))(((((..(((...........))).)))))...)..)))))...)))))..))))))).................... (-31.16 = -32.16 + 1.00)
Location | 11,411,956 – 11,412,076 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.50 |
Mean single sequence MFE | -37.16 |
Consensus MFE | -34.80 |
Energy contribution | -35.48 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.03 |
Mean z-score | -1.63 |
Structure conservation index | 0.94 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.979959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11411956 120 - 27905053 AAAGCAAGUUAAAUCCUUAAGAUGUCCUGGCGGCAAAGUAAAUCCGGCGAGGUUACCUUUUCCAAGAGGGUUGACCUCGGACCGCAGUCCUUUGUUUUUACGCGCCACUGAAGACAUCGA ....................((((((..((.(((...(((((..(((.((((((((((((.....))))).)))))))((((....)))).)))..)))))..))).))...)))))).. ( -39.90) >DroSec_CAF1 159597 120 - 1 AAAGCAAGUUAAAUCCUUAAGAUGUCCUGGCGGCUAAGUAAAUCCGGUGAGGUUACCUUUUCCAAGAGGGUUGACCUCGGACCGCAGUCCUUUGUUUUUACGCGCCACUGAAGACAUCGA ....................((((((..((.(((...(((((..(((.((((((((((((.....))))).)))))))((((....)))).)))..)))))..))).))...)))))).. ( -39.70) >DroSim_CAF1 151060 120 - 1 AAAGCAAGUUAAAUCCUUAAGAUGUCCUGGCGGCAAAGUAAAUCCGGUGAGGUUACCUUUUCCAAGAGGGUUGACCUCGGACCGCAGUCCUUUGUUUUUACGCGCCACUGAAGACAUCGA ....................((((((..((.(((...(((((..(((.((((((((((((.....))))).)))))))((((....)))).)))..)))))..))).))...)))))).. ( -39.70) >DroEre_CAF1 147367 120 - 1 AAGGCAAGUUAAAUCCUUAAGAUGUCCUGCCGGCAAAGUAAAUCCGCUGAGGUUACCUUUUCCAAGAGGGUUGACCUCGGACCGCAGUCCUUUGUUUUUACGCGCCACUGAAGACAUCGA ((((..........))))..((((((.....(((...(((((..(...((((((((((((.....))))).)))))))((((....))))...)..)))))..)))......)))))).. ( -37.10) >DroYak_CAF1 151324 120 - 1 AAGGCACGUUAAAUCCUUAAGAUGUCCUGGCGGCAAAGUAAAUCCGGUGAGGUUACCUUUUCCAAGAGGGUUGACCUCCGAACGCAGUCCUUUGUUUUUACGCGCCAUUGAAGACAGCGA .(((.(((((..........))))))))((((((((((......((..((((((((((((.....))))).)))))))....)).....)))))).......)))).............. ( -29.41) >consensus AAAGCAAGUUAAAUCCUUAAGAUGUCCUGGCGGCAAAGUAAAUCCGGUGAGGUUACCUUUUCCAAGAGGGUUGACCUCGGACCGCAGUCCUUUGUUUUUACGCGCCACUGAAGACAUCGA ....................((((((..((.(((...(((((..((..((((((((((((.....))))).)))))))((((....))))..))..)))))..))).))...)))))).. (-34.80 = -35.48 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:46 2006