Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,407,295 – 11,407,452 |
Length | 157 |
Max. P | 0.988147 |
Location | 11,407,295 – 11,407,412 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.90 |
Mean single sequence MFE | -36.85 |
Consensus MFE | -26.00 |
Energy contribution | -26.72 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.10 |
Mean z-score | -1.79 |
Structure conservation index | 0.71 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541159 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11407295 117 + 27905053 CGACGGUCCUGGCCACGCCCACUGCCAAAC-CAC--ACAUCAUCAUAAUGGAGGGCGGACAAUUAUGCGGCAAUUAAAAGAGCUCAAACGUGGAAAACGAUUUGAGUCCUCGCGUAAUUG ....(((....))).(((((....(((...-...--............))).)))))..((((((((((.........((..(((((((((.....))).))))))..)))))))))))) ( -35.87) >DroSec_CAF1 154959 118 + 1 CGACGGGCCGCGCCACGCCCACUGCCACACCCCC--ACAUCAUCAUAAUGGAGGGCGGACAAUUAUGCGGCAAUUAAAAGAGCUCAAACGUGGAAAACGAUUUGAGUCCUCGCGUAAUUG ....((((........)))).(((((.(.((...--.............)).)))))).((((((((((.........((..(((((((((.....))).))))))..)))))))))))) ( -36.69) >DroSim_CAF1 146414 118 + 1 CGGCGGGCCGGGCCACACCCACUGCCACACCCGC--ACAUCAUCAUAAUGGAGGGCGGACAAUUAUGCGGCAAUUAAAAGAGCUCAAACGUGGAAAACGAUUUGAGUCCUCGCGUAAUUG .(((((...(((.....))).)))))....((((--.(..(((....)))..).)))).((((((((((.........((..(((((((((.....))).))))))..)))))))))))) ( -42.50) >DroEre_CAF1 142692 111 + 1 CGCC------GGCCACGCCCACCGCCACCC-CAC--ACAUCCUCAUAAUGGAGGCCGGACAAUUAUGCGGCAAUUAAAAGAGCUCGGACGUGCAACACGAGUUGAGUCCUCGCGUAAUAG .(((------((((..((.....)).....-...--...(((.......))))))))).).((((((((((..........))..((((...((((....)))).)))).)))))))).. ( -35.60) >DroYak_CAF1 146406 114 + 1 CGACG-----GGCCACGCCCACUGCCACCC-CACACACAUCAUCAUAAUGGAGGGCGGACAAUUAUGCGGCAAUUAAAAGAGCUCAAACGUGGAAAACGAUUUGAGUCCGCGCAUAAUGG ....(-----(((...)))).(((((..((-..................))..)))))...((((((((..........(..(((((((((.....))).))))))..).)))))))).. ( -33.57) >consensus CGACGG_CC_GGCCACGCCCACUGCCACAC_CAC__ACAUCAUCAUAAUGGAGGGCGGACAAUUAUGCGGCAAUUAAAAGAGCUCAAACGUGGAAAACGAUUUGAGUCCUCGCGUAAUUG ...............(((((....(((.....................))).)))))..((((((((((.........((..(((((((((.....))).))))))..)))))))))))) (-26.00 = -26.72 + 0.72)
Location | 11,407,332 – 11,407,452 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.08 |
Mean single sequence MFE | -32.02 |
Consensus MFE | -26.34 |
Energy contribution | -26.46 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.17 |
Mean z-score | -2.30 |
Structure conservation index | 0.82 |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.988147 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11407332 120 + 27905053 CAUCAUAAUGGAGGGCGGACAAUUAUGCGGCAAUUAAAAGAGCUCAAACGUGGAAAACGAUUUGAGUCCUCGCGUAAUUGUAGAAAAAUUUCACAAAUAUCCAGAAAGUAAUGGCUGCAA ..............(((((((((((((((.........((..(((((((((.....))).))))))..)))))))))))))...................(((........))))))).. ( -30.40) >DroSec_CAF1 154997 120 + 1 CAUCAUAAUGGAGGGCGGACAAUUAUGCGGCAAUUAAAAGAGCUCAAACGUGGAAAACGAUUUGAGUCCUCGCGUAAUUGUAGAAAAAUGUCGCAAAUAUCCAGCAAGUAAUGGCUGCAA ........((((..(((((((((((((((.........((..(((((((((.....))).))))))..))))))))))))).........)))).....))))(((.((....))))).. ( -34.00) >DroSim_CAF1 146452 120 + 1 CAUCAUAAUGGAGGGCGGACAAUUAUGCGGCAAUUAAAAGAGCUCAAACGUGGAAAACGAUUUGAGUCCUCGCGUAAUUGUAGAAAAAUGUCGCAAAUAUCCAGCAAGUAAUGGCUGCAA ........((((..(((((((((((((((.........((..(((((((((.....))).))))))..))))))))))))).........)))).....))))(((.((....))))).. ( -34.00) >DroEre_CAF1 142723 120 + 1 CCUCAUAAUGGAGGCCGGACAAUUAUGCGGCAAUUAAAAGAGCUCGGACGUGCAACACGAGUUGAGUCCUCGCGUAAUAGUGCAAAAAUAUCGCAAACAUUCAGCAAGUAAUGGCUGCAA ((((......))))..(.((.((((((((((..........))..((((...((((....)))).)))).)))))))).)).).........(((..(((((.....).))))..))).. ( -32.70) >DroYak_CAF1 146440 120 + 1 CAUCAUAAUGGAGGGCGGACAAUUAUGCGGCAAUUAAAAGAGCUCAAACGUGGAAAACGAUUUGAGUCCGCGCAUAAUGGUAGAAAAAUAUCGCAAACAUUCAGCAAGUAAUGGCCGCAA ..............((((...(((((((((...........((((((((((.....))).)))))))))))((..((((...((......)).....))))..))..)))))..)))).. ( -29.00) >consensus CAUCAUAAUGGAGGGCGGACAAUUAUGCGGCAAUUAAAAGAGCUCAAACGUGGAAAACGAUUUGAGUCCUCGCGUAAUUGUAGAAAAAUAUCGCAAAUAUCCAGCAAGUAAUGGCUGCAA ..............(((((((((((((((.........((..(((((((((.....))).))))))..)))))))))))))...................(((........))))))).. (-26.34 = -26.46 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:35 2006