Locus 4282

Sequence ID 3R_DroMel_CAF1
Location 11,406,908 – 11,407,024
Length 116
Max. P 0.570346
window6962

overview

Window 2

Location 11,406,908 – 11,407,024
Length 116
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 95.40
Mean single sequence MFE -36.67
Consensus MFE -33.43
Energy contribution -33.66
Covariance contribution 0.23
Combinations/Pair 1.06
Mean z-score -1.71
Structure conservation index 0.91
SVM decision value 0.07
SVM RNA-class probability 0.570346
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11406908 116 - 27905053
UCUGUAUUUUGUACUCUGAGUCCUGGUUCCGGAUCGCAUACAUCCAUCCAUCUAUCCAGCAAGGAUCCAGGAUGCAGGGGUGUUGCCUGGUCGUGGCUUAUUCACACGUAAUAGUU
....((((.(((.(((((.(((((((.(((((((.......))))......((....))...))).))))))).)))))(((..(((.......))).....)))))).))))... ( -33.50)
>DroSec_CAF1 154574 116 - 1
UUUGUAUGCUGUAUUCUGAGUCCUGGUUCCGGAUCCCAUACAUCCAUCCAUCCAUCUAGCCAGGAUCCAGGAUGCAGGGGUGUUGCCUGGUCGUGGCUUAUUCACACGUAAUAGUU
....((((((((((((((..((((((((..((((...............))))....))))))))..))))))))))(((((..(((.......))).)))))...))))...... ( -38.26)
>DroSim_CAF1 146029 116 - 1
UUUGUAUGCUGUAUUCUGAGUCCUGGUUCCGGAUCCCAUACAUCCAUCCAUCCAUCUAGCCAGGAUCCAGGAUGCAGGGGUGUUGCCUGGUCGUGGCUUAUUCACACGUAAUAGUU
....((((((((((((((..((((((((..((((...............))))....))))))))..))))))))))(((((..(((.......))).)))))...))))...... ( -38.26)
>consensus
UUUGUAUGCUGUAUUCUGAGUCCUGGUUCCGGAUCCCAUACAUCCAUCCAUCCAUCUAGCCAGGAUCCAGGAUGCAGGGGUGUUGCCUGGUCGUGGCUUAUUCACACGUAAUAGUU
..(((...((((((((((..((((((((..((((...............))))....))))))))..))))))))))(((((..(((.......))).)))))))).......... (-33.43 = -33.66 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:33 2006