Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,404,076 – 11,404,191 |
Length | 115 |
Max. P | 0.999558 |
Location | 11,404,076 – 11,404,191 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.70 |
Mean single sequence MFE | -29.72 |
Consensus MFE | -26.74 |
Energy contribution | -27.34 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.47 |
Structure conservation index | 0.90 |
SVM decision value | 3.72 |
SVM RNA-class probability | 0.999558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11404076 115 + 27905053 AUCGAGGCAGUAACACAACAAUUAUUGUUAUUAUUGCUUGGGAACUGCAGCACAUCUCGAGUCUGAGAAAC-----GAUUCACCCUCGACCGAAUCCUCACACUAAGUAUUUCCCCUCGA .((((((((((((.((((......))))..)))))))..(((((.(((........(((((..((((....-----..))))..)))))..((....)).......))).)))))))))) ( -30.30) >DroSec_CAF1 151726 115 + 1 AUCGAGGCAGUAACACAACAAUUAUUGUUAUUAUUGCUUGGGAACUGCAGCACAUCUCGAGUCUGAGAAAC-----GAUUCACCCUCGACCGAAUCCUCACUCUAAGUAUUUCCCCUCAA ...((((((((((.((((......))))..)))))))..(((((.(((........(((((..((((....-----..))))..)))))..((....)).......))).)))))))).. ( -27.70) >DroSim_CAF1 143201 115 + 1 AUCGAGGCAGUAACACAACAAUUAUUGUUAUUAUUGCUUGGGAACUGCAGCACUUCUCGAGUCUGAGAAAC-----GAUUCACCCUCGACCGAAUCCUCACUCUAAGUAUUUCCCCUCGA .((((((((((((.((((......))))..)))))))..(((((.(((........(((((..((((....-----..))))..)))))..((....)).......))).)))))))))) ( -30.30) >DroEre_CAF1 139779 114 + 1 AUCGAGGCAGUAACACAACAAUUAUUGUUAUUA-UGCUUGGGAACUGCAGCAUAUCUCGAGUCUGAGAAGC-----GAUUCACCCUCGCCCGAAUCCCCACUCUAAGUAUUUCCCCUCGA .((((((((((((((..........))))))..-)))..(((((.(((.((...(((((....))))).))-----(((((..........)))))..........))).)))))))))) ( -28.40) >DroYak_CAF1 142943 120 + 1 AUCGAGGCAGUAACACAACAAUUAUUGUUAUUAUUGCUUGGGAACUGCAGCAUAUCUCGAGUUUGAGAAACGACACGACUCACCCUCGACCGAAUCCUCACUCUAAGUAUUUCCCCUCGA .((((((((((((.((((......))))..)))))))..(((((.(((........(((((..((((...........))))..)))))..((....)).......))).)))))))))) ( -31.90) >consensus AUCGAGGCAGUAACACAACAAUUAUUGUUAUUAUUGCUUGGGAACUGCAGCACAUCUCGAGUCUGAGAAAC_____GAUUCACCCUCGACCGAAUCCUCACUCUAAGUAUUUCCCCUCGA .((((((((((((.((((......))))..)))))))..(((((.(((......(((((....)))))........(((((..........)))))..........))).)))))))))) (-26.74 = -27.34 + 0.60)
Location | 11,404,076 – 11,404,191 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.70 |
Mean single sequence MFE | -34.50 |
Consensus MFE | -30.18 |
Energy contribution | -29.82 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.08 |
Mean z-score | -1.52 |
Structure conservation index | 0.87 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899377 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11404076 115 - 27905053 UCGAGGGGAAAUACUUAGUGUGAGGAUUCGGUCGAGGGUGAAUC-----GUUUCUCAGACUCGAGAUGUGCUGCAGUUCCCAAGCAAUAAUAACAAUAAUUGUUGUGUUACUGCCUCGAU ((((((((((...((((((.((((((((((.(....).))))))-----....)))).))).))).((.....)).)))))..(((.(((((.((((....))))))))).)))))))). ( -34.90) >DroSec_CAF1 151726 115 - 1 UUGAGGGGAAAUACUUAGAGUGAGGAUUCGGUCGAGGGUGAAUC-----GUUUCUCAGACUCGAGAUGUGCUGCAGUUCCCAAGCAAUAAUAACAAUAAUUGUUGUGUUACUGCCUCGAU ((((((((((.......(((.((.((((((.(....).))))))-----.)).)))((((.......)).))....)))))..(((.(((((.((((....))))))))).)))))))). ( -30.70) >DroSim_CAF1 143201 115 - 1 UCGAGGGGAAAUACUUAGAGUGAGGAUUCGGUCGAGGGUGAAUC-----GUUUCUCAGACUCGAGAAGUGCUGCAGUUCCCAAGCAAUAAUAACAAUAAUUGUUGUGUUACUGCCUCGAU ((((((((((.(((((.(((((((((((((.(....).))))))-----....)))..))))...)))))......)))))..(((.(((((.((((....))))))))).)))))))). ( -34.10) >DroEre_CAF1 139779 114 - 1 UCGAGGGGAAAUACUUAGAGUGGGGAUUCGGGCGAGGGUGAAUC-----GCUUCUCAGACUCGAGAUAUGCUGCAGUUCCCAAGCA-UAAUAACAAUAAUUGUUGUGUUACUGCCUCGAU ((((((..............(((((((((((((((.......))-----)).((((......))))....))).))))))))((((-((((((......))))))))))....)))))). ( -37.50) >DroYak_CAF1 142943 120 - 1 UCGAGGGGAAAUACUUAGAGUGAGGAUUCGGUCGAGGGUGAGUCGUGUCGUUUCUCAAACUCGAGAUAUGCUGCAGUUCCCAAGCAAUAAUAACAAUAAUUGUUGUGUUACUGCCUCGAU ((((((((((.......((((....))))..(((((..((((.((...))...))))..)))))............)))))..(((.(((((.((((....))))))))).)))))))). ( -35.30) >consensus UCGAGGGGAAAUACUUAGAGUGAGGAUUCGGUCGAGGGUGAAUC_____GUUUCUCAGACUCGAGAUGUGCUGCAGUUCCCAAGCAAUAAUAACAAUAAUUGUUGUGUUACUGCCUCGAU ((((((((((.(((.....)))((.((....(((((..(((.............)))..)))))...)).))....)))))..(((.(((((.((((....))))))))).)))))))). (-30.18 = -29.82 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:25 2006