Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,403,487 – 11,403,607 |
Length | 120 |
Max. P | 0.856538 |
Location | 11,403,487 – 11,403,607 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.45 |
Mean single sequence MFE | -39.70 |
Consensus MFE | -27.86 |
Energy contribution | -28.02 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.10 |
Mean z-score | -2.11 |
Structure conservation index | 0.70 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11403487 120 - 27905053 AGGACCUCGCAGGGUGGGAAAAGAGGAGGGCUCGGCCUUGCAGGGCACAAUGUGGUUGAUGAUAAGGAUUAACCACACAGAGUUGGUCUUAUCCCGGCCACAAAAAAAUAUGAGUGUGUG ...((..(((.((.(((((...((((..(((((.((((....))))....((((((((((.......))))))))))..)))))..)))).))))).)).((........)).))).)). ( -39.30) >DroSec_CAF1 151134 119 - 1 AGGACCUCGCAGGGUGGGAAAAGAGGUGGACUCGGCCUUGCAGGGCACAAUGUGGUUGACGAUAAGGAUUAACCACACAGAGUUGGGCUUAUCCCGGCCACAAA-AAAUAUGAGCGGGUG ...(((.(((.((.(((((...(((.(.(((((.((((....))))....((((((((((......).)))))))))..))))).).))).))))).)).((..-.....)).)))))). ( -44.90) >DroSim_CAF1 142609 118 - 1 AGGACCUCGCAGGGUGGGAAAAGAGGAGGACUCGGCCUUGCAGGGCACAAUGUGGUUGACGAUAAGGAUUAACCACACAGAGUUGGACUUAUCCCGGCCACAA--AAAUAUGAGCGGGUG ...(((.(((.((.(((((...(((...(((((.((((....))))....((((((((((......).)))))))))..)))))...))).))))).)).((.--.....)).)))))). ( -42.40) >DroEre_CAF1 139232 108 - 1 AGGACCUCGCCGGGUGGGAAAAGGGCAGGACUCGGCCUUGCAGGGCACAAUGUGGUUGAGGAUAAGGAUUAGGCACGCGGAAAUGUGCUUAUCUCGGCCACAAA--AA-GG--------- .(..((..((.((((.((.............)).)))).))..))..)..(((((((((((........((((((((......)))))))))))))))))))..--..-..--------- ( -36.32) >DroYak_CAF1 142329 109 - 1 AGGACCUCGCAGGGUGGGAAAGGCGCAGGGAUCGGCCUUGCAGGACACAAUGUGGUCGCUGAUAAGGAUUAACCACACGGAGUUGGGCUUAUCCGGUCAGCAAA--AAUAU--------- ..((((..(((..((((......)((((((.....))))))....)))..)))))))((((((..((((...(((........)))....)))).))))))...--.....--------- ( -35.60) >consensus AGGACCUCGCAGGGUGGGAAAAGAGGAGGACUCGGCCUUGCAGGGCACAAUGUGGUUGACGAUAAGGAUUAACCACACAGAGUUGGGCUUAUCCCGGCCACAAA_AAAUAUGAG_G_GUG ....(((.(((((((.((.............)).))))))))))......((((((((..((((((......(((........))).)))))).)))))))).................. (-27.86 = -28.02 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:18 2006