Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,401,915 – 11,402,035 |
Length | 120 |
Max. P | 0.999690 |
Location | 11,401,915 – 11,402,035 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -29.44 |
Consensus MFE | -23.90 |
Energy contribution | -23.62 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.06 |
Mean z-score | -1.61 |
Structure conservation index | 0.81 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11401915 120 + 27905053 UUUAUGGUUCAUUUGGUGAGAGAUUUGUUUGUUGUUAUUUGGCUGCGCUUAUUGCACUUAAUGCAGCGUAUCAAAAACGCAGGGGAAAGGAGAAAAUUGGAUUCUUGUAAAAUGAACCUG .....(((((((((.(..((((.(((.(((((.(((.(((((.(((((((((((....))))).))))))))))))))))))).)))..((.....))...))))..).))))))))).. ( -31.50) >DroSec_CAF1 149579 120 + 1 UUUAUGGUUCAUUUGGUGAGAGAUUUGUUUGUUGUUAUUUGGCUGCGCUUAUUGCACUUAAUGCAGCGUAUCAAAAACGCAAGGGAAAGGAGAAAAUUGGAUUCUUGUAAAAUGAACCUG .....(((((((((.(..((((.(((.(((((.(((.(((((.(((((((((((....))))).))))))))))))))))))).)))..((.....))...))))..).))))))))).. ( -31.90) >DroSim_CAF1 140645 120 + 1 UUUAUGGUUCAUUUGGUGAGAGAUUUGUUUGUUGUUAUUUGGCUGCGCUUAUUGCACUUAAUGCAGCGUAUCAAAAACGCAAGGGAAAGGAGAAAAUUGGAUUCUUGUAAAAUGAACCUG .....(((((((((.(..((((.(((.(((((.(((.(((((.(((((((((((....))))).))))))))))))))))))).)))..((.....))...))))..).))))))))).. ( -31.90) >DroEre_CAF1 137656 120 + 1 UUUAUGGUUCAUUUGGUGAGAGAUUUGUUUGUUGUUAUUCGGCUGCACUUAUUGCACUUAAUGCGGCGUAUCAAAAAUGCAAGGGAAAGGAGAAAAUUGGAUUCUUGUAAAAUGAACCUG .....(((((((((.(..((((.((..(((.((.((.(((.((((((.(((.......)))))))))((((.....))))..))).)).)).)))...)).))))..).))))))))).. ( -30.20) >DroYak_CAF1 140644 110 + 1 UUUAUGGUUCAUUUGGUGAAAGAUUUGUUUGUUGUUA----------CUUAUUGCACUUAAUGCGGCGUAUCAAAAAUGCGAGGGAAAGGAGAAAAUUGGAUUCUUGUAAAAUGAACCUG .....(((((((((.....((((.((.(((.((.((.----------(((.(((((.....)))))(((((.....))))).))).)).)).)))....)).))))...))))))))).. ( -21.70) >consensus UUUAUGGUUCAUUUGGUGAGAGAUUUGUUUGUUGUUAUUUGGCUGCGCUUAUUGCACUUAAUGCAGCGUAUCAAAAACGCAAGGGAAAGGAGAAAAUUGGAUUCUUGUAAAAUGAACCUG .....(((((((((.(..((((.((..(((.((.((................((((.....))))((((.......))))......)).)).)))...)).))))..).))))))))).. (-23.90 = -23.62 + -0.28)
Location | 11,401,915 – 11,402,035 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -22.02 |
Consensus MFE | -18.98 |
Energy contribution | -19.62 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.07 |
Mean z-score | -3.20 |
Structure conservation index | 0.86 |
SVM decision value | 3.90 |
SVM RNA-class probability | 0.999690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11401915 120 - 27905053 CAGGUUCAUUUUACAAGAAUCCAAUUUUCUCCUUUCCCCUGCGUUUUUGAUACGCUGCAUUAAGUGCAAUAAGCGCAGCCAAAUAACAACAAACAAAUCUCUCACCAAAUGAACCAUAAA ..(((((((((....((((.......))))........(((((((((((...((((......))))))).))))))))............................)))))))))..... ( -25.10) >DroSec_CAF1 149579 120 - 1 CAGGUUCAUUUUACAAGAAUCCAAUUUUCUCCUUUCCCUUGCGUUUUUGAUACGCUGCAUUAAGUGCAAUAAGCGCAGCCAAAUAACAACAAACAAAUCUCUCACCAAAUGAACCAUAAA ..(((((((((....((((.......))))........(((((((((((...((((......))))))).))))))))............................)))))))))..... ( -23.00) >DroSim_CAF1 140645 120 - 1 CAGGUUCAUUUUACAAGAAUCCAAUUUUCUCCUUUCCCUUGCGUUUUUGAUACGCUGCAUUAAGUGCAAUAAGCGCAGCCAAAUAACAACAAACAAAUCUCUCACCAAAUGAACCAUAAA ..(((((((((....((((.......))))........(((((((((((...((((......))))))).))))))))............................)))))))))..... ( -23.00) >DroEre_CAF1 137656 120 - 1 CAGGUUCAUUUUACAAGAAUCCAAUUUUCUCCUUUCCCUUGCAUUUUUGAUACGCCGCAUUAAGUGCAAUAAGUGCAGCCGAAUAACAACAAACAAAUCUCUCACCAAAUGAACCAUAAA ..(((((((((....((((.......))))...(((..(((((((((((.(((..........)))))).))))))))..))).......................)))))))))..... ( -22.00) >DroYak_CAF1 140644 110 - 1 CAGGUUCAUUUUACAAGAAUCCAAUUUUCUCCUUUCCCUCGCAUUUUUGAUACGCCGCAUUAAGUGCAAUAAG----------UAACAACAAACAAAUCUUUCACCAAAUGAACCAUAAA ..(((((((((....((((.......))))..........((((((.((........))..))))))......----------.......................)))))))))..... ( -17.00) >consensus CAGGUUCAUUUUACAAGAAUCCAAUUUUCUCCUUUCCCUUGCGUUUUUGAUACGCUGCAUUAAGUGCAAUAAGCGCAGCCAAAUAACAACAAACAAAUCUCUCACCAAAUGAACCAUAAA ..(((((((((....((((.......))))........(((((((((((.(((..........)))))).))))))))............................)))))))))..... (-18.98 = -19.62 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:17 2006