Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,400,588 – 11,400,707 |
Length | 119 |
Max. P | 0.825496 |
Location | 11,400,588 – 11,400,707 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.70 |
Mean single sequence MFE | -22.95 |
Consensus MFE | -18.42 |
Energy contribution | -19.18 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.38 |
Structure conservation index | 0.80 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778855 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11400588 119 + 27905053 ACAUGCCGCACAAAUCACGUAUUUGUCAAA-AAACAAACUGCAAUAAAGGCAAACAAAUUGCCAAAAAAUGGGAAAAACAUGCCCAAAUAAUAAGCCAAUGCCUGGGGGCUAAGUCCCAA ..................((((((((....-..))))).)))......(((((.....)))))......(((((.......((((..........(((.....)))))))....))))). ( -24.10) >DroSec_CAF1 148253 120 + 1 ACAUGCCGCACAAAUCACGUAUUUGUCAAAAAAACAAAUUGCAAUGGAGGCAAACAAAUUGCCAAAAAAUGGGAAAAACAUGCCCAAAUAAUAAGCCAAUGCCUGGGGGCUAAGUCCCAA .......(.((((((.....))))))).............(((.(((.(((((.....)))))......((((.........)))).........))).)))...(((((...))))).. ( -26.00) >DroSim_CAF1 139337 119 + 1 ACAUGCCGCACAAAUCACGUAUUUGUCAAA-AAACAAAUUGCAAUGGAGGCAAACAAAUUGCCAAAAAAUGGGAAAAACAUGCCCAAAUAAUAAGCCAAUGCCUGGGGGCUAAGUCCCAA ....(((.(.((........((((((....-..)))))).(((.(((.(((((.....)))))......((((.........)))).........))).))).))).))).......... ( -26.00) >DroYak_CAF1 139320 118 + 1 ACAUGCCGCACAAAUCACGUAUUUGUCAAA-AAACAAACUGCAAACUAGGAAAACAAAUUGCCAAAAAAUGUGAAAAACACGCCCAAAUAAUAAGCCAAUGCCUGG-GGCCAAAUCCCAA ....(((...........((((((((....-..))))).)))...(((((....................(((.....)))((...........)).....)))))-))).......... ( -15.70) >consensus ACAUGCCGCACAAAUCACGUAUUUGUCAAA_AAACAAACUGCAAUGGAGGCAAACAAAUUGCCAAAAAAUGGGAAAAACAUGCCCAAAUAAUAAGCCAAUGCCUGGGGGCUAAGUCCCAA ..................((((((((.......))))).)))......(((((.....)))))......(((((.......((((..........(((.....)))))))....))))). (-18.42 = -19.18 + 0.75)
Location | 11,400,588 – 11,400,707 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.70 |
Mean single sequence MFE | -29.38 |
Consensus MFE | -26.80 |
Energy contribution | -27.05 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.03 |
Mean z-score | -1.75 |
Structure conservation index | 0.91 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11400588 119 - 27905053 UUGGGACUUAGCCCCCAGGCAUUGGCUUAUUAUUUGGGCAUGUUUUUCCCAUUUUUUGGCAAUUUGUUUGCCUUUAUUGCAGUUUGUUU-UUUGACAAAUACGUGAUUUGUGCGGCAUGU .(((((....(((....)))....(((((.....))))).......)))))......(((((.....))))).....(((.(((((((.-...))))))).(((.......))))))... ( -30.50) >DroSec_CAF1 148253 120 - 1 UUGGGACUUAGCCCCCAGGCAUUGGCUUAUUAUUUGGGCAUGUUUUUCCCAUUUUUUGGCAAUUUGUUUGCCUCCAUUGCAAUUUGUUUUUUUGACAAAUACGUGAUUUGUGCGGCAUGU .(((((....(((....)))....(((((.....))))).......)))))......(((((.....))))).....(((.(((((((.....))))))).(((.......))))))... ( -30.20) >DroSim_CAF1 139337 119 - 1 UUGGGACUUAGCCCCCAGGCAUUGGCUUAUUAUUUGGGCAUGUUUUUCCCAUUUUUUGGCAAUUUGUUUGCCUCCAUUGCAAUUUGUUU-UUUGACAAAUACGUGAUUUGUGCGGCAUGU .(((((....(((....)))....(((((.....))))).......)))))......(((((.....))))).....(((.(((((((.-...))))))).(((.......))))))... ( -30.20) >DroYak_CAF1 139320 118 - 1 UUGGGAUUUGGCC-CCAGGCAUUGGCUUAUUAUUUGGGCGUGUUUUUCACAUUUUUUGGCAAUUUGUUUUCCUAGUUUGCAGUUUGUUU-UUUGACAAAUACGUGAUUUGUGCGGCAUGU (((((.......)-))))((....(((((.....)))))(..(...((((........((((.(((......))).)))).(((((((.-...)))))))..))))...)..).)).... ( -26.60) >consensus UUGGGACUUAGCCCCCAGGCAUUGGCUUAUUAUUUGGGCAUGUUUUUCCCAUUUUUUGGCAAUUUGUUUGCCUCCAUUGCAAUUUGUUU_UUUGACAAAUACGUGAUUUGUGCGGCAUGU .(((((....(((....)))....(((((.....))))).......)))))......(((((.....))))).....(((.(((((((.....))))))).(((.......))))))... (-26.80 = -27.05 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:11 2006