Locus 4272

Sequence ID 3R_DroMel_CAF1
Location 11,400,116 – 11,400,219
Length 103
Max. P 0.723712
window6937

overview

Window 7

Location 11,400,116 – 11,400,219
Length 103
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 82.92
Mean single sequence MFE -23.26
Consensus MFE -16.34
Energy contribution -16.62
Covariance contribution 0.28
Combinations/Pair 1.18
Mean z-score -1.83
Structure conservation index 0.70
SVM decision value 0.41
SVM RNA-class probability 0.723712
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11400116 103 + 27905053
UUAUUAAAUUGCAAGUCCUCCUCCACUCUGGGCUUACUAUCUCUAGCCCUGGAACCGACCAUCCAGCUCACUUUUGCGGCUUCUCCGCCAGCUUGGAUCCCCA-----------------
..............(((....((((....(((((..........)))))))))...))).(((((((........))(((......)))....))))).....----------------- ( -23.40)
>DroSec_CAF1 147807 99 + 1
UUAUUAAAUUGCAAGUCCUUCUCCACUCUGGGUUUACUAUCUCUAGCCCUGGGA----CCAUCCAGGUCACUUUUGCGGCUUCUCCGCCAGCUUGGAUCACCA-----------------
..............(((((..........(((((..........))))).))))----).((((((((.......((((.....))))..)))))))).....----------------- ( -22.50)
>DroSim_CAF1 138889 103 + 1
UUAUUAAAUUGCAAGUCCUCCUCCACUCUGGGUUUACUAUCUCUAGCCCUGGGACCGACCAUCCAGCUCACUUUUGCGGCUUCUACGCCAGCUUGGAUCCCCA-----------------
.............................(((((..........))))).((((((((.(.....((........))(((......))).).)))).))))..----------------- ( -22.00)
>DroEre_CAF1 135910 119 + 1
UUAUUAAAUUGCAAGUCCUCCUCCGCUCCGGGCUUACUAUCCCUAGCCCUAGC-CCUGCCAUCCAGCUCACUUUUGCGGCUUCUCGGCCAGCUGGGCUCCCCAAUCCCCAUCCCCAUCCC
.......((((..................(((((..........))))).(((-((.((......((........))((((....)))).)).)))))...))))............... ( -26.30)
>DroYak_CAF1 138846 109 + 1
UUAUUAAAUUGCAAGUCCUCCUCCACUUCGGGCUUACUAUCUCUAGCCCUGAG----ACCAUCCAGCUCACUUUUGCGGCUUCUCGGCCAGCUUGGAUCCCCAGUCCCCAUCU-------
.......((((..............(((.(((((..........))))).)))----...(((((((........))((((....))))....)))))...))))........------- ( -22.10)
>consensus
UUAUUAAAUUGCAAGUCCUCCUCCACUCUGGGCUUACUAUCUCUAGCCCUGGGACC_ACCAUCCAGCUCACUUUUGCGGCUUCUCCGCCAGCUUGGAUCCCCA_________________
..............((((.......(((.(((((..........))))).)))......................(((((......))).))..))))...................... (-16.34 = -16.62 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:09 2006