Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,570,377 – 1,570,477 |
Length | 100 |
Max. P | 0.509037 |
Location | 1,570,377 – 1,570,477 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 88.36 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -18.60 |
Energy contribution | -19.27 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.09 |
Structure conservation index | 0.72 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509037 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1570377 100 - 27905053 AUACCAAUGGAUAUUGACAAGACAAAUAAGACCAAAGUAUCGGCGUGGCAGUUCUAUGGGGUUUCCGUUGGAGUGGACGAUUCUAAUGAAGAAUCGCUAA ...((((((((..(((......)))....((((...(((..(((......))).)))..))))))))))))..(((.(((((((.....)))))))))). ( -25.80) >DroSec_CAF1 1274 92 - 1 AUACCAAUGGAUAUUGGCAAGACAAAUAAGACCA--------GCGAGGGAGUUCUAUGGGCUUUCCGUUGGAGUGGACGAUUCUGAUGAAGAAUCAAUAA ...(((.......(((......)))......(((--------(((.(..((((.....))))..)))))))..)))..((((((.....))))))..... ( -26.90) >DroSim_CAF1 1762 92 - 1 AUACCAAUGGAUAUUGGCAAGACAAAUAUGACCA--------GCGUGGCAGUUCUAUAGGCUUUCCGUUGGAGUGGACGAUUCUGAUGAAGAAUCAAUAA ...((((((((....(((..........((.((.--------....)))).........))).)))))))).......((((((.....))))))..... ( -24.31) >consensus AUACCAAUGGAUAUUGGCAAGACAAAUAAGACCA________GCGUGGCAGUUCUAUGGGCUUUCCGUUGGAGUGGACGAUUCUGAUGAAGAAUCAAUAA ...((((((((..(((......)))..................(((((.....))))).....)))))))).......((((((.....))))))..... (-18.60 = -19.27 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:55 2006