Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,399,052 – 11,399,144 |
Length | 92 |
Max. P | 0.865529 |
Location | 11,399,052 – 11,399,144 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.05 |
Mean single sequence MFE | -28.90 |
Consensus MFE | -20.27 |
Energy contribution | -20.27 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.11 |
Mean z-score | -2.17 |
Structure conservation index | 0.70 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865529 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11399052 92 - 27905053 UUCAAAUGGCUUGGCUUUCGUGCACUUCUCCUCCGCUGGAAG---------------------CCCACUCAGCGGGUAAACCUCCUUGAAAUACUCC-------AGAAAGCUACGCAACA ........((.(((((((((((..(((((........)))))---------------------..)))((((.(((....))).).)))........-------.)))))))).)).... ( -24.60) >DroSec_CAF1 146740 92 - 1 UUCAAAUGGCUUGGCUUUCGUGCACUUCUCCUCCGCUGGAAG---------------------CCCACUCAGCGGGUAAACCUCCUCGAAAUACUCC-------AGAAAGCUACGCAACA ........((.(((((((((((..(((((........)))))---------------------..)))((((.(((....))).)).))........-------.)))))))).)).... ( -24.60) >DroSim_CAF1 137828 92 - 1 UUCAAAUGGCUUGGCUUUCGUGCACUUCUCCUCCGCUGGAAG---------------------CCCACUCAGCGGGUAAACCUCCUCGAAAUACUCC-------AGAAAGCUACGCAACA ........((.(((((((((((..(((((........)))))---------------------..)))((((.(((....))).)).))........-------.)))))))).)).... ( -24.60) >DroEre_CAF1 134837 113 - 1 UUCAAAUGGCUUGGCUUUCGUGCACUGCUCCUCAGCUGGAAGCUGGGAGCUGGGAGCUGGAGACCCACUCAGCGGUAAAACCUCCUCGAAAUACCCC-------AGAAAGCCACGCAACA ........((.((((((((.......(((((.((((.....)))))))))((((.(((((........)))))((.....))............)))-------))))))))).)).... ( -44.90) >DroYak_CAF1 137740 104 - 1 UUCAAAUGGCUUGGCUUUCGUGCACUUCGCCGCCGCUGGAAAU----------------GCAACCCACUCAGCGGUUAAACCUCCUCGAAAUACUCCAGAAUCCAGAAAGCUACGCAACA ........((.(((((((((.((.....)))((((((((....----------------.........)))))))).............................)))))))).)).... ( -25.82) >consensus UUCAAAUGGCUUGGCUUUCGUGCACUUCUCCUCCGCUGGAAG_____________________CCCACUCAGCGGGUAAACCUCCUCGAAAUACUCC_______AGAAAGCUACGCAACA ........((.(((((((((....)......((((((((.............................)))))))).............................)))))))).)).... (-20.27 = -20.27 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:01 2006