Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,398,013 – 11,398,110 |
Length | 97 |
Max. P | 0.937939 |
Location | 11,398,013 – 11,398,110 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 95.28 |
Mean single sequence MFE | -38.79 |
Consensus MFE | -34.33 |
Energy contribution | -35.89 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.03 |
Mean z-score | -2.35 |
Structure conservation index | 0.88 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.937939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11398013 97 + 27905053 AUUGCCGAAAAGGCAAAGAUCUCGGCCUGU--GUGCGGUGUGUGUAAAUCAAUCAAAACGCUUCCGCCGGGGCAGGUUGACUGCCACACGAGUCGGGAG .(((((.....)))))...(((((((.(((--((((((.((((..............))))..))))...(((((.....)))))))))).))))))). ( -41.34) >DroSec_CAF1 145712 99 + 1 AUGGCCGAAAACGCAAAGAUCUCGGCCUGUGUGUGCGGUGUGUGUAAAUCAAUCAAAACGCUUCCGCCGGGGCAGGUUGACUGCCACACGAGCCGGGAG ...((.......)).....(((((((.((((((.((((.((((..............))))..)))))..(((((.....)))))))))).))))))). ( -37.64) >DroSim_CAF1 136799 99 + 1 AUGGCCGAAAAGGCAAAGAUCUCGGCCUGUGUGUGCGGUGUGUGUAAAUCAAUCAAAACGCUUCCGCCGGGGCAGGUUGACUGCCACACGAGCCGGGAG ...(((.....))).....(((((((.((((((.((((.((((..............))))..)))))..(((((.....)))))))))).))))))). ( -42.54) >DroEre_CAF1 133878 97 + 1 AUGGCCGAAAAGGCAAAGAUCUCGGCCUC--UGUGCGGUGUGUGUAAAUCAAUCAAAACGCUUCCGCCGGGGCAGCUUGACUGCCACACGAGCCAGGAG .((((((...((((...(....).))))(--((.((((.((((..............))))..)))))))(((((.....)))))...)).)))).... ( -33.64) >consensus AUGGCCGAAAAGGCAAAGAUCUCGGCCUGU_UGUGCGGUGUGUGUAAAUCAAUCAAAACGCUUCCGCCGGGGCAGGUUGACUGCCACACGAGCCGGGAG ...(((.....))).....(((((((.((((((.((((.((((..............))))..)))))..(((((.....)))))))))).))))))). (-34.33 = -35.89 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:58 2006